{"metadata":{"kernelspec":{"language":"python","display_name":"Python 3","name":"python3"},"language_info":{"name":"python","version":"3.11.13","mimetype":"text/x-python","codemirror_mode":{"name":"ipython","version":3},"pygments_lexer":"ipython3","nbconvert_exporter":"python","file_extension":".py"},"kaggle":{"accelerator":"gpu","dataSources":[{"sourceId":59156,"databundleVersionId":13874099,"sourceType":"competition"}],"dockerImageVersionId":31090,"isInternetEnabled":false,"language":"python","sourceType":"notebook","isGpuEnabled":true}},"nbformat_minor":4,"nbformat":4,"cells":[{"cell_type":"code","source":"# Update of AmbrosMs' great notebook\n# Removes the constant FPS assumption; handles variable frame timing\n# Added full GPU suppoprt and extra trees/feats\n\nverbose = True\n\nimport pandas as pd\nimport numpy as np\nfrom tqdm import tqdm\nimport itertools\nimport warnings\nimport json\nimport os, random\nimport gc, re, math\nimport lightgbm\nfrom collections import defaultdict\nimport polars as pl\nfrom scipy import signal, stats\nfrom typing import Dict, Optional, Tuple\nfrom time import perf_counter \nfrom sklearn.base import ClassifierMixin, BaseEstimator, clone\nfrom sklearn.model_selection import cross_val_predict, GroupKFold, StratifiedKFold\nfrom sklearn.pipeline import make_pipeline\nfrom sklearn.model_selection import StratifiedShuffleSplit\nfrom sklearn.metrics import f1_score\n\nwarnings.filterwarnings('ignore')\nUSE_GPU = (\"KAGGLE_KERNEL_RUN_TYPE\" in __import__(\"os\").environ) and (__import__(\"shutil\").which(\"nvidia-smi\") is not None)\nprint(f'Using GPU? {USE_GPU}')\n\nfrom xgboost import XGBClassifier\nfrom catboost import CatBoostClassifier\n \nSEED = 1234","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-11-10T09:28:19.301021Z","iopub.execute_input":"2025-11-10T09:28:19.301665Z","iopub.status.idle":"2025-11-10T09:28:25.286798Z","shell.execute_reply.started":"2025-11-10T09:28:19.301639Z","shell.execute_reply":"2025-11-10T09:28:25.286052Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"# --- SEED EVERYTHING -----\nos.environ[\"PYTHONHASHSEED\"] = str(SEED)      # has to be set very early\n\nrnd = np.random.RandomState(SEED)\nrandom.seed(SEED)\nnp.random.seed(SEED)\n\ndef _make_lgbm(**kw):\n    kw.setdefault(\"random_state\", SEED)\n    # kw.setdefault(\"deterministic\", True)\n    # kw.setdefault(\"force_row_wise\", True) \n    kw.setdefault(\"feature_fraction_seed\", SEED)\n    kw.setdefault(\"data_random_seed\", SEED)\n    kw.setdefault(\"device\", 'gpu' if USE_GPU else 'cpu')\n    return lightgbm.LGBMClassifier(**kw)\n\ndef _make_xgb(**kw):\n    kw.setdefault(\"random_state\", SEED)\n    kw.setdefault(\"tree_method\", \"gpu_hist\" if USE_GPU else \"hist\")\n    # kw.setdefault(\"deterministic_histogram\", True)\n    return XGBClassifier(**kw)\n\ndef _make_cb(**kw):\n    kw.setdefault(\"random_seed\", SEED)\n    if USE_GPU:\n        kw.setdefault(\"task_type\", \"GPU\")\n        kw.setdefault(\"devices\", \"0\")\n    else:\n        kw.setdefault(\"task_type\", \"CPU\")\n\n    return CatBoostClassifier(**kw)\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-11-10T09:28:25.288258Z","iopub.execute_input":"2025-11-10T09:28:25.288688Z","iopub.status.idle":"2025-11-10T09:28:25.294825Z","shell.execute_reply.started":"2025-11-10T09:28:25.28867Z","shell.execute_reply":"2025-11-10T09:28:25.294145Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"# ================= StratifiedSubsetClassifier =================\nclass StratifiedSubsetClassifierWEval(ClassifierMixin, BaseEstimator):\n    def __init__(self,\n                 estimator,\n                 n_samples=None,\n                 random_state: int = 42,\n                 valid_size: float = 0.10,\n                 val_cap_ratio: float = 0.25,\n                 es_rounds: \"int|str\" = \"auto\",\n                 es_metric: str = \"auto\"):\n        self.estimator = estimator\n        self.n_samples = (int(n_samples) if (n_samples is not None) else None)\n        self.random_state = random_state\n        self.valid_size = float(valid_size)\n        self.val_cap_ratio = float(val_cap_ratio)\n        self.es_rounds = es_rounds\n        self.es_metric = es_metric\n \n    # -------------------------- API --------------------------\n    def fit(self, X: pd.DataFrame, y):\n        y = np.asarray(y)\n        n_total = len(y); assert n_total == len(X)\n\n        tr_idx, va_idx = self._compute_train_val_indices(y, n_total)\n        Xtr = X.iloc[tr_idx]; ytr = y[tr_idx]\n\n        Xtr = Xtr.to_numpy(np.float32, copy=False)\n\n        Xva = yva = None\n        if va_idx is not None and len(va_idx) > 0:\n            Xva = X.iloc[va_idx].to_numpy(np.float32, copy=False); yva = y[va_idx]\n\n        # Compute pos_rate on VALIDATION (what ES monitors)\n        pos_rate = None\n        if yva is not None and len(yva) > 0:\n            pos_rate = float(np.mean(yva == 1))\n\n        # Decide metric & patience\n        metric = self._choose_metric(pos_rate)\n        patience = self._choose_patience(pos_rate)\n\n        # Apply imbalance knobs per library\n        if self._is_xgb(self.estimator):\n            # scale_pos_weight = n_neg / n_pos on TRAIN\n            n_pos = max(1, int((ytr == 1).sum()))\n            n_neg = max(1, len(ytr) - n_pos)\n            self.estimator.set_params(scale_pos_weight=(n_neg / n_pos))\n            self.estimator.set_params(eval_metric=metric)\n\n        elif self._is_catboost(self.estimator):\n            # GPU-safe auto balancing\n            try: self.estimator.set_params(auto_class_weights=\"Balanced\")\n            except Exception: pass\n            try: self.estimator.set_params(eval_metric=metric)\n            except Exception: pass\n\n        # Fit with ES if we have any validation (single-class OK with Logloss)\n        has_valid = (Xva is not None and len(yva) > 0)\n        if has_valid and self._is_xgb(self.estimator):\n            import xgboost as xgb\n            self.estimator.fit(\n                Xtr, ytr,\n                eval_set=[(Xva, yva)],\n                verbose=False,\n                callbacks=[xgb.callback.EarlyStopping(\n                    rounds=int(patience),\n                    metric_name=metric,\n                    data_name=\"validation_0\",\n                    save_best=True\n                )]\n            )\n        elif has_valid and self._is_catboost(self.estimator):\n            from catboost import Pool\n            self.estimator.set_params(\n                use_best_model=True,\n                od_type=\"Iter\",\n                od_wait=int(patience),\n                custom_metric=[\"PRAUC:type=Classic;hints=skip_train~true\"],\n            )\n            self.estimator.fit(\n                Xtr, ytr,\n                eval_set=Pool(Xva, yva),\n                verbose=False,\n                metric_period=50\n            )\n        else:\n            # Fall back: train on train split without ES\n            self.estimator.fit(Xtr, ytr)\n\n        self.classes_ = getattr(self.estimator, \"classes_\", np.array([0, 1]))\n        self._tr_idx_ = tr_idx; self._va_idx_ = va_idx; self._pos_rate_ = pos_rate\n        return self\n\n    def predict_proba(self, X: pd.DataFrame):\n        return self.estimator.predict_proba(X)\n\n    def predict(self, X: pd.DataFrame):\n        return self.estimator.predict(X)\n\n    # -------------------------- helpers --------------------------\n    def _compute_train_val_indices(self, y: np.ndarray, n_total: int):\n        rng = np.random.default_rng(self.random_state)\n        n_classes = np.unique(y).size\n\n        def full_data_split():\n            if self.valid_size <= 0 or n_classes < 2:\n                idx = rng.permutation(n_total); return idx, None\n            sss = StratifiedShuffleSplit(n_splits=1, test_size=self.valid_size, random_state=self.random_state)\n            tr, va = next(sss.split(np.zeros(n_total, dtype=np.int8), y))\n            return tr, va\n\n        if self.n_samples is None or self.n_samples >= n_total:\n            return full_data_split()\n\n        # Use n_samples for train; build val from remainder (capped)\n        sss_tr = StratifiedShuffleSplit(n_splits=1, train_size=self.n_samples, random_state=self.random_state)\n        tr_idx, rest_idx = next(sss_tr.split(np.zeros(n_total, dtype=np.int8), y))\n        remaining = len(rest_idx)\n\n        min_val_needed = int(np.ceil(self.n_samples * max(self.valid_size, 0.0)))\n        val_cap = max(min_val_needed, int(round(self.val_cap_ratio * self.n_samples)))\n        want_val = min(remaining, val_cap)\n\n        y_rest = y[rest_idx]\n        if remaining < min_val_needed or np.unique(y_rest).size < 2 or self.valid_size <= 0:\n            return full_data_split()\n\n        sss_val = StratifiedShuffleSplit(n_splits=1, train_size=want_val, random_state=self.random_state)\n        try:\n            va_sel, _ = next(sss_val.split(np.zeros(remaining, dtype=np.int8), y_rest))\n        except ValueError:\n            return full_data_split()\n\n        va_idx = rest_idx[va_sel]\n        return tr_idx, va_idx\n\n    def _choose_metric(self, pos_rate=0.01) -> str:\n        if self.es_metric != \"auto\":\n            return self.es_metric\n        if pos_rate is None or pos_rate == 0.0 or pos_rate == 1.0:\n            return \"logloss\" if self._is_xgb(self.estimator) else \"Logloss\"\n        return \"aucpr\" if self._is_xgb(self.estimator) else \"PRAUC:type=Classic\"\n\n    def _choose_patience(self, pos_rate: Optional[float]) -> int:\n        if isinstance(self.es_rounds, int):\n            return self.es_rounds\n        try:\n            n_estimators = (int(self.estimator.get_params().get(\"n_estimators\", 200))\n                            if self._is_xgb(self.estimator)\n                            else int(self.estimator.get_params().get(\"iterations\", 500)))\n        except Exception:\n            n_estimators = 200\n        base = max(30, int(round(0.20 * (n_estimators or 200))))\n        if pos_rate is None:\n            return base\n        if pos_rate < 0.005:   # <0.5%\n            return int(round(base * 1.75))\n        if pos_rate < 0.02:    # <2%\n            return int(round(base * 1.40))\n        return base\n\n    @staticmethod\n    def _is_xgb(est):\n        name = est.__class__.__name__.lower(); mod = getattr(est, \"__module__\", \"\")\n        return \"xgb\" in name or \"xgboost\" in mod or hasattr(est, \"get_xgb_params\")\n\n    @staticmethod\n    def _is_catboost(est):\n        name = est.__class__.__name__.lower(); mod = getattr(est, \"__module__\", \"\")\n        return \"catboost\" in name or \"catboost\" in mod or hasattr(est, \"get_all_params\")\n\n\nclass StratifiedSubsetClassifier(ClassifierMixin, BaseEstimator):\n    def __init__(self, estimator, n_samples, random_state=SEED):\n        self.estimator = estimator\n        self.n_samples = n_samples and int(n_samples)\n        self.random_state = random_state\n\n    def fit(self, X, y):\n        y = np.asarray(y)\n        n_total = len(y)\n\n        if self.n_samples is None or self.n_samples >= n_total:\n            rng = np.random.default_rng(self.random_state)\n            idx = rng.permutation(n_total)\n        else:\n            sss = StratifiedShuffleSplit(\n                n_splits=1, train_size=self.n_samples, random_state=self.random_state\n            )\n            idx, _ = next(sss.split(np.zeros(n_total, dtype=np.int8), y))\n\n        Xn = X.iloc[idx]\n        Xn = Xn.to_numpy(np.float32, copy=False)\n        yn = y[idx]\n\n        self.estimator.fit(Xn, yn)\n        self.classes_ = getattr(self.estimator, \"classes_\", np.array([0, 1]))\n        return self\n\n    def predict_proba(self, X):\n        return self.estimator.predict_proba(X)\n\n    def predict(self, X):\n        return self.estimator.predict(X)\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-11-10T09:28:25.295522Z","iopub.execute_input":"2025-11-10T09:28:25.295773Z","iopub.status.idle":"2025-11-10T09:28:25.318849Z","shell.execute_reply.started":"2025-11-10T09:28:25.295753Z","shell.execute_reply":"2025-11-10T09:28:25.318139Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"# ==================== SCORING FUNCTIONS ====================\n\nclass HostVisibleError(Exception):\n    pass\n\ndef single_lab_f1(lab_solution: pl.DataFrame, lab_submission: pl.DataFrame, beta: float = 1) -> float:\n    label_frames: defaultdict[str, set[int]] = defaultdict(set)\n    prediction_frames: defaultdict[str, set[int]] = defaultdict(set)\n\n    for row in lab_solution.to_dicts():\n        label_frames[row['label_key']].update(range(row['start_frame'], row['stop_frame']))\n\n    for video in lab_solution['video_id'].unique():\n        active_labels: str = lab_solution.filter(pl.col('video_id') == video)['behaviors_labeled'].first()\n        active_labels: set[str] = set(json.loads(active_labels))\n        predicted_mouse_pairs: defaultdict[str, set[int]] = defaultdict(set)\n\n        for row in lab_submission.filter(pl.col('video_id') == video).to_dicts():\n            if ','.join([str(row['agent_id']), str(row['target_id']), row['action']]) not in active_labels:\n                continue\n           \n            new_frames = set(range(row['start_frame'], row['stop_frame']))\n            new_frames = new_frames.difference(prediction_frames[row['prediction_key']])\n            prediction_pair = ','.join([str(row['agent_id']), str(row['target_id'])])\n            if predicted_mouse_pairs[prediction_pair].intersection(new_frames):\n                raise HostVisibleError('Multiple predictions for the same frame from one agent/target pair')\n            prediction_frames[row['prediction_key']].update(new_frames)\n            predicted_mouse_pairs[prediction_pair].update(new_frames)\n\n    tps = defaultdict(int)\n    fns = defaultdict(int)\n    fps = defaultdict(int)\n    for key, pred_frames in prediction_frames.items():\n        action = key.split('_')[-1]\n        matched_label_frames = label_frames[key]\n        tps[action] += len(pred_frames.intersection(matched_label_frames))\n        fns[action] += len(matched_label_frames.difference(pred_frames))\n        fps[action] += len(pred_frames.difference(matched_label_frames))\n\n    distinct_actions = set()\n    for key, frames in label_frames.items():\n        action = key.split('_')[-1]\n        distinct_actions.add(action)\n        if key not in prediction_frames:\n            fns[action] += len(frames)\n\n    action_f1s = []\n    for action in distinct_actions:\n        if tps[action] + fns[action] + fps[action] == 0:\n            action_f1s.append(0)\n        else:\n            action_f1s.append((1 + beta**2) * tps[action] / ((1 + beta**2) * tps[action] + beta**2 * fns[action] + fps[action]))\n    return sum(action_f1s) / len(action_f1s)\n\ndef mouse_fbeta(solution: pd.DataFrame, submission: pd.DataFrame, beta: float = 1) -> float:\n    if len(solution) == 0 or len(submission) == 0:\n        raise ValueError('Missing solution or submission data')\n\n    expected_cols = ['video_id', 'agent_id', 'target_id', 'action', 'start_frame', 'stop_frame']\n\n    for col in expected_cols:\n        if col not in solution.columns:\n            raise ValueError(f'Solution is missing column {col}')\n        if col not in submission.columns:\n            raise ValueError(f'Submission is missing column {col}')\n\n    solution: pl.DataFrame = pl.DataFrame(solution)\n    submission: pl.DataFrame = pl.DataFrame(submission)\n    assert (solution['start_frame'] <= solution['stop_frame']).all()\n    assert (submission['start_frame'] <= submission['stop_frame']).all()\n    solution_videos = set(solution['video_id'].unique())\n    submission = submission.filter(pl.col('video_id').is_in(solution_videos))\n\n    solution = solution.with_columns(\n        pl.concat_str(\n            [\n                pl.col('video_id').cast(pl.Utf8),\n                pl.col('agent_id').cast(pl.Utf8),\n                pl.col('target_id').cast(pl.Utf8),\n                pl.col('action'),\n            ],\n            separator='_',\n        ).alias('label_key'),\n    )\n    submission = submission.with_columns(\n        pl.concat_str(\n            [\n                pl.col('video_id').cast(pl.Utf8),\n                pl.col('agent_id').cast(pl.Utf8),\n                pl.col('target_id').cast(pl.Utf8),\n                pl.col('action'),\n            ],\n            separator='_',\n        ).alias('prediction_key'),\n    )\n\n    lab_scores = []\n    for lab in solution['lab_id'].unique():\n        lab_solution = solution.filter(pl.col('lab_id') == lab).clone()\n        lab_videos = set(lab_solution['video_id'].unique())\n        lab_submission = submission.filter(pl.col('video_id').is_in(lab_videos)).clone()\n        lab_scores.append(single_lab_f1(lab_solution, lab_submission, beta=beta))\n\n    return sum(lab_scores) / len(lab_scores)\n\ndef score(solution: pd.DataFrame, submission: pd.DataFrame, row_id_column_name: str, beta: float = 1) -> float:\n    solution = solution.drop(row_id_column_name, axis='columns', errors='ignore')\n    submission = submission.drop(row_id_column_name, axis='columns', errors='ignore')\n    return mouse_fbeta(solution, submission, beta=beta)","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-11-10T09:28:25.319542Z","iopub.execute_input":"2025-11-10T09:28:25.319735Z","iopub.status.idle":"2025-11-10T09:28:25.338898Z","shell.execute_reply.started":"2025-11-10T09:28:25.319719Z","shell.execute_reply":"2025-11-10T09:28:25.338191Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"# ==================== DATA LOADING ====================\n\ntrain = pd.read_csv('/kaggle/input/MABe-mouse-behavior-detection/train.csv')\n\n# drop likely-sleeping MABe22 clips: condition == \"lights on\"\ntrain = train.loc[~(train['lab_id'].astype(str).str.contains('MABe22', na=False) &\n                    train['mouse1_condition'].astype(str).str.lower().eq('lights on'))].copy()\n\ntrain['n_mice'] = 4 - train[['mouse1_strain', 'mouse2_strain', 'mouse3_strain', 'mouse4_strain']].isna().sum(axis=1)\n\ntest = pd.read_csv('/kaggle/input/MABe-mouse-behavior-detection/test.csv')\ntest['sleeping'] = (\n    test['lab_id'].astype(str).str.contains('MABe22', na=False) &\n    test['mouse1_condition'].astype(str).str.lower().eq('lights on')\n)\ntest['n_mice'] = 4 - test[['mouse1_strain','mouse2_strain','mouse3_strain','mouse4_strain']].isna().sum(axis=1)\n\nbody_parts_tracked_list = list(np.unique(train.body_parts_tracked))\n\ndrop_body_parts = ['headpiece_bottombackleft', 'headpiece_bottombackright', 'headpiece_bottomfrontleft', 'headpiece_bottomfrontright', \n                   'headpiece_topbackleft', 'headpiece_topbackright', 'headpiece_topfrontleft', 'headpiece_topfrontright',                  \n                   'spine_1', 'spine_2', 'tail_middle_1', 'tail_middle_2', 'tail_midpoint']\n\n_sex_cols = [f'mouse{i}_sex' for i in range(1,5)]\n_train_sex_lut = (train[['video_id'] + _sex_cols].drop_duplicates('video_id')\n                  .set_index('video_id').to_dict('index'))\n_test_sex_lut  = (test[['video_id']  + _sex_cols].drop_duplicates('video_id')\n                  .set_index('video_id').to_dict('index'))\n_FEATURE_TEMPLATES = {}\n\ndef generate_mouse_data(dataset, traintest, traintest_directory=None,\n                        generate_single=True, generate_pair=True):\n    assert traintest in ['train', 'test']\n    if traintest_directory is None:\n        traintest_directory = f\"/kaggle/input/MABe-mouse-behavior-detection/{traintest}_tracking\"\n\n    def _to_num(x):\n        if isinstance(x, (int, np.integer)): return int(x)\n        m = re.search(r'(\\d+)$', str(x))\n        return int(m.group(1)) if m else None\n\n    for _, row in dataset.iterrows():\n        lab_id   = row.lab_id\n        video_id = row.video_id\n        fps      = float(row.frames_per_second)\n        n_mice   = int(row.n_mice)\n        arena_w  = float(row.get('arena_width_cm', np.nan))\n        arena_h  = float(row.get('arena_height_cm', np.nan))\n        sleeping = bool(getattr(row, 'sleeping', False))\n        arena_shape = row.get('arena_shape', 'rectangular')\n\n        if not isinstance(row.behaviors_labeled, str):\n            continue\n\n        # ---- tracking ----\n        path = f\"{traintest_directory}/{lab_id}/{video_id}.parquet\"\n        vid = pd.read_parquet(path)\n        if len(np.unique(vid.bodypart)) > 5:\n            vid = vid.query(\"~ bodypart.isin(@drop_body_parts)\")\n        pvid = vid.pivot(columns=['mouse_id','bodypart'], index='video_frame', values=['x','y'])\n        del vid\n        pvid = pvid.reorder_levels([1,2,0], axis=1).T.sort_index().T\n        pvid = (pvid / float(row.pix_per_cm_approx)).astype('float32', copy=False)\n\n        # available mouse_id labels in tracking (could be ints or strings)\n        avail = list(pvid.columns.get_level_values('mouse_id').unique())\n        avail_set = set(avail) | set(map(str, avail)) | {f\"mouse{_to_num(a)}\" for a in avail if _to_num(a) is not None}\n\n        def _resolve(agent_str):\n            \"\"\"Return the matching mouse_id label present in pvid (int or str), or None.\"\"\"\n            m = re.search(r'(\\d+)$', str(agent_str))\n            cand = [agent_str]\n            if m:\n                n = int(m.group(1))\n                cand = [n, n-1, str(n), f\"mouse{n}\", agent_str]  # try 1-based, 0-based, str, canonical\n            for c in cand:\n                if c in avail_set:  # compare within unified set\n                    # return the exact label used in columns\n                    if c in set(avail): return c\n                    # map back to the exact label that exists (int preferred)\n                    for a in avail:\n                        if str(a) == str(c) or f\"mouse{_to_num(a)}\" == str(c):\n                            return a\n            return None\n\n        # ---- behaviors ----\n        vb = json.loads(row.behaviors_labeled)\n        vb = sorted(list({b.replace(\"'\", \"\") for b in vb}))\n        vb = pd.DataFrame([b.split(',') for b in vb], columns=['agent','target','action'])\n        vb['agent']  = vb['agent'].astype(str)\n        vb['target'] = vb['target'].astype(str)\n        vb['action'] = vb['action'].astype(str).str.lower()\n\n        if traintest == 'train':\n            try:\n                annot = pd.read_parquet(path.replace('train_tracking', 'train_annotation'))\n            except FileNotFoundError:\n                continue\n\n        def _mk_meta(index, agent_id, target_id):\n            m = pd.DataFrame({\n                'lab_id':        lab_id,\n                'video_id':      video_id,\n                'agent_id':      agent_id,\n                'target_id':     target_id,\n                'video_frame':   index.astype('int32', copy=False),\n                'frames_per_second': np.float32(fps),\n                'sleeping':      sleeping,\n                'arena_shape':   arena_shape,\n                'arena_width_cm': np.float32(arena_w),\n                'arena_height_cm': np.float32(arena_h),\n                'n_mice':        np.int8(n_mice),\n            })\n            for c in ('lab_id','video_id','agent_id','target_id','arena_shape'):\n                m[c] = m[c].astype('category')\n            return m\n\n        # ---------- SINGLE ----------\n        if generate_single:\n            vb_single = vb.query(\"target == 'self'\")\n            for agent_str in pd.unique(vb_single['agent']):\n                col_lab = _resolve(agent_str)\n                if col_lab is None:\n                    # if verbose: print(f\"[skip single] {video_id} missing {agent_str} in tracking (avail={sorted(avail)})\")\n                    continue\n                actions = sorted(vb_single.loc[vb_single['agent'].eq(agent_str), 'action'].unique().tolist())\n                if not actions:\n                    continue\n\n                single = pvid.loc[:, col_lab]\n                meta_df = _mk_meta(single.index, agent_str, 'self')\n\n                if traintest == 'train':\n                    a_num = _to_num(col_lab)\n                    y = pd.DataFrame(False, index=single.index.astype('int32', copy=False), columns=actions)\n                    a_sub = annot.query(\"(agent_id == @a_num) & (target_id == @a_num)\")\n                    for i in range(len(a_sub)):\n                        ar = a_sub.iloc[i]\n                        a = str(ar.action).lower()\n                        if a in y.columns:\n                            y.loc[int(ar['start_frame']):int(ar['stop_frame']), a] = True\n                    yield 'single', single, meta_df, y\n                else:\n                    yield 'single', single, meta_df, actions\n\n        # ---------- PAIR (ONLY LABELED PAIRS) ----------\n        if generate_pair:\n            vb_pair = vb.query(\"target != 'self'\")\n            if len(vb_pair) > 0:\n                allowed_pairs = set(map(tuple, vb_pair[['agent','target']].itertuples(index=False, name=None)))\n\n                for agent_num, target_num in itertools.permutations(\n                        np.unique(pvid.columns.get_level_values('mouse_id')), 2):\n                    agent_str = f\"mouse{_to_num(agent_num)}\"\n                    target_str = f\"mouse{_to_num(target_num)}\"\n                    if (agent_str, target_str) not in allowed_pairs:\n                        continue\n\n                    a_col = _resolve(agent_str)\n                    b_col = _resolve(target_str)\n                    if a_col is None or b_col is None:\n                        # if verbose: print(f\"[skip pair] {video_id} missing {agent_str}->{target_str}\")\n                        continue\n\n                    actions = sorted(\n                        vb_pair.query(\"(agent == @agent_str) & (target == @target_str)\")['action'].unique().tolist()\n                    )\n                    if not actions:\n                        continue\n\n                    pair_xy = pd.concat([pvid[a_col], pvid[b_col]], axis=1, keys=['A','B'])\n                    meta_df = _mk_meta(pair_xy.index, agent_str, target_str)\n\n                    if traintest == 'train':\n                        a_num = _to_num(a_col); b_num = _to_num(b_col)\n                        y = pd.DataFrame(False, index=pair_xy.index.astype('int32', copy=False), columns=actions)\n                        a_sub = annot.query(\"(agent_id == @a_num) & (target_id == @b_num)\")\n                        for i in range(len(a_sub)):\n                            ar = a_sub.iloc[i]\n                            a = str(ar.action).lower()\n                            if a in y.columns:\n                                y.loc[int(ar['start_frame']):int(ar['stop_frame']), a] = True\n                        yield 'pair', pair_xy, meta_df, y\n                    else:\n                        yield 'pair', pair_xy, meta_df, actions\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-11-10T09:28:25.340432Z","iopub.execute_input":"2025-11-10T09:28:25.34075Z","iopub.status.idle":"2025-11-10T09:28:25.649463Z","shell.execute_reply.started":"2025-11-10T09:28:25.340736Z","shell.execute_reply":"2025-11-10T09:28:25.64893Z"},"jupyter":{"source_hidden":true}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"# ==================== ADAPTIVE THRESHOLDING ====================\n\ndef predict_multiclass_adaptive(pred, meta, action_thresholds=None):\n    \"\"\"Adaptive thresholding per action + temporal smoothing\"\"\"\n    if action_thresholds is None:\n        action_thresholds = defaultdict(lambda: 0.27)\n\n    # Change 5: Per-action smoothing windows\n    smooth_windows = {'rest': 15, 'huddle': 15, 'selfgroom': 9, 'sniff': 7, 'approach': 7,\n                      'attack': 3, 'flinch': 3, 'chase': 5, 'escape': 5}\n    pred_smoothed = pred.copy()\n    for col in pred.columns:\n        w = smooth_windows.get(col, 5)\n        pred_smoothed[col] = pred[col].rolling(window=w, min_periods=1, center=True).mean()\n    \n    ama = np.argmax(pred_smoothed, axis=1)\n    \n    max_probs = pred_smoothed.max(axis=1)\n    threshold_mask = np.zeros(len(pred_smoothed), dtype=bool)\n    for i, action in enumerate(pred_smoothed.columns):\n        action_mask = (ama == i)\n        threshold = action_thresholds.get(action, 0.27)\n        threshold_mask |= (action_mask & (max_probs >= threshold))\n    \n    ama = np.where(threshold_mask, ama, -1)\n    ama = pd.Series(ama, index=meta.video_frame)\n    \n    changes_mask = (ama != ama.shift(1)).values\n    ama_changes = ama[changes_mask]\n    meta_changes = meta[changes_mask]\n    mask = ama_changes.values >= 0\n    mask[-1] = False\n    \n    submission_part = pd.DataFrame({\n        'video_id': meta_changes['video_id'][mask].values,\n        'agent_id': meta_changes['agent_id'][mask].values,\n        'target_id': meta_changes['target_id'][mask].values,\n        'action': pred.columns[ama_changes[mask].values],\n        'start_frame': ama_changes.index[mask],\n        'stop_frame': ama_changes.index[1:][mask[:-1]]\n    })\n    \n    stop_video_id = meta_changes['video_id'][1:][mask[:-1]].values\n    stop_agent_id = meta_changes['agent_id'][1:][mask[:-1]].values\n    stop_target_id = meta_changes['target_id'][1:][mask[:-1]].values\n    \n    for i in range(len(submission_part)):\n        video_id = submission_part.video_id.iloc[i]\n        agent_id = submission_part.agent_id.iloc[i]\n        target_id = submission_part.target_id.iloc[i]\n        if i < len(stop_video_id):\n            if stop_video_id[i] != video_id or stop_agent_id[i] != agent_id or stop_target_id[i] != target_id:\n                new_stop_frame = meta.query(\"(video_id == @video_id)\").video_frame.max() + 1\n                submission_part.iat[i, submission_part.columns.get_loc('stop_frame')] = new_stop_frame\n        else:\n            new_stop_frame = meta.query(\"(video_id == @video_id)\").video_frame.max() + 1\n            submission_part.iat[i, submission_part.columns.get_loc('stop_frame')] = new_stop_frame\n    \n    # Change 6: Per-action minimum duration filtering\n    min_durations = {'rest': 10, 'huddle': 10, 'selfgroom': 8, 'sniff': 5, \n                     'attack': 2, 'flinch': 2, 'chase': 3, 'escape': 3, 'mount': 5}\n    duration = submission_part.stop_frame - submission_part.start_frame\n    mask = [duration.iloc[i] >= min_durations.get(submission_part['action'].iloc[i], 3) \n            for i in range(len(submission_part))]\n    submission_part = submission_part[mask].reset_index(drop=True)\n    \n    # Change 7: Gap filling - merge nearby same-action events\n    if len(submission_part) > 0:\n        max_gap = {'rest': 20, 'huddle': 20, 'selfgroom': 10, 'sniff': 5}\n        merged = []\n        for (vid, aid, tid, action), grp in submission_part.groupby(['video_id', 'agent_id', 'target_id', 'action']):\n            grp = grp.sort_values('start_frame').reset_index(drop=True)\n            gap = max_gap.get(action, 8)\n            i = 0\n            while i < len(grp):\n                start, stop = grp.loc[i, 'start_frame'], grp.loc[i, 'stop_frame']\n                while i + 1 < len(grp) and grp.loc[i + 1, 'start_frame'] - stop <= gap:\n                    i += 1\n                    stop = grp.loc[i, 'stop_frame']\n                merged.append((vid, aid, tid, action, start, stop))\n                i += 1\n        submission_part = pd.DataFrame(merged, columns=['video_id', 'agent_id', 'target_id', 'action', 'start_frame', 'stop_frame'])\n    \n    if len(submission_part) > 0:\n        assert (submission_part.stop_frame > submission_part.start_frame).all(), 'stop <= start'\n    \n    if verbose: print(f'  actions found: {len(submission_part)}')\n    return submission_part","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-11-10T09:28:25.650138Z","iopub.execute_input":"2025-11-10T09:28:25.650364Z","iopub.status.idle":"2025-11-10T09:28:25.659529Z","shell.execute_reply.started":"2025-11-10T09:28:25.650342Z","shell.execute_reply":"2025-11-10T09:28:25.658851Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"# ==================== ADVANCED FEATURE ENGINEERING (FPS-AWARE) ====================\n\ndef safe_rolling(series, window, func, min_periods=None):\n    \"\"\"Safe rolling operation with NaN handling\"\"\"\n    if min_periods is None:\n        min_periods = max(1, window // 4)\n    return series.rolling(window, min_periods=min_periods, center=True).apply(func, raw=True)\n\ndef _scale(n_frames_at_30fps, fps, ref=30.0):\n    \"\"\"Scale a frame count defined at 30 fps to the current video's fps.\"\"\"\n    return max(1, int(round(n_frames_at_30fps * float(fps) / ref)))\n\ndef _scale_signed(n_frames_at_30fps, fps, ref=30.0):\n    \"\"\"Signed version of _scale for forward/backward shifts (keeps at least 1 frame when |n|>=1).\"\"\"\n    if n_frames_at_30fps == 0:\n        return 0\n    s = 1 if n_frames_at_30fps > 0 else -1\n    mag = max(1, int(round(abs(n_frames_at_30fps) * float(fps) / ref)))\n    return s * mag\n\ndef _fps_from_meta(meta_df, fallback_lookup, default_fps=30.0):\n    if 'frames_per_second' in meta_df.columns and pd.notnull(meta_df['frames_per_second']).any():\n        return float(meta_df['frames_per_second'].iloc[0])\n    vid = meta_df['video_id'].iloc[0]\n    return float(fallback_lookup.get(vid, default_fps))\n\ndef _speed(cx: pd.Series, cy: pd.Series, fps: float) -> pd.Series:\n    return np.hypot(cx.diff(), cy.diff()).fillna(0.0) * float(fps)\n\ndef _roll_future_mean(s: pd.Series, w: int, min_p: int = 1) -> pd.Series:\n    # mean over [t, t+w-1]\n    return s.iloc[::-1].rolling(w, min_periods=min_p).mean().iloc[::-1]\n\ndef _roll_future_var(s: pd.Series, w: int, min_p: int = 2) -> pd.Series:\n    # var over [t, t+w-1]\n    return s.iloc[::-1].rolling(w, min_periods=min_p).var().iloc[::-1]\n\n\ndef add_curvature_features(X, center_x, center_y, fps):\n    \"\"\"Trajectory curvature (window lengths scaled by fps).\"\"\"\n    vel_x = center_x.diff()\n    vel_y = center_y.diff()\n    acc_x = vel_x.diff()\n    acc_y = vel_y.diff()\n\n    cross_prod = vel_x * acc_y - vel_y * acc_x\n    vel_mag = np.sqrt(vel_x**2 + vel_y**2)\n    curvature = np.abs(cross_prod) / (vel_mag**3 + 1e-6)  # invariant to time scaling\n\n    for w in [30, 60]:\n        ws = _scale(w, fps)\n        X[f'curv_mean_{w}'] = curvature.rolling(ws, min_periods=max(1, ws // 6)).mean()\n\n    angle = np.arctan2(vel_y, vel_x)\n    angle_change = np.abs(angle.diff())\n    w = 30\n    ws = _scale(w, fps)\n    X[f'turn_rate_{w}'] = angle_change.rolling(ws, min_periods=max(1, ws // 6)).sum()\n\n    return X\n\ndef add_multiscale_features(X, center_x, center_y, fps):\n    \"\"\"Multi-scale temporal features (speed in cm/s; windows scaled by fps).\"\"\"\n    # displacement per frame is already in cm (pix normalized earlier); convert to cm/s\n    speed = np.sqrt(center_x.diff()**2 + center_y.diff()**2) * float(fps)\n\n    scales = [10, 40, 160]\n    for scale in scales:\n        ws = _scale(scale, fps)\n        if len(speed) >= ws:\n            X[f'sp_m{scale}'] = speed.rolling(ws, min_periods=max(1, ws // 4)).mean()\n            X[f'sp_s{scale}'] = speed.rolling(ws, min_periods=max(1, ws // 4)).std()\n\n    if len(scales) >= 2 and f'sp_m{scales[0]}' in X.columns and f'sp_m{scales[-1]}' in X.columns:\n        X['sp_ratio'] = X[f'sp_m{scales[0]}'] / (X[f'sp_m{scales[-1]}'] + 1e-6)\n\n    return X\n\ndef add_state_features(X, center_x, center_y, fps):\n    \"\"\"Behavioral state transitions; bins adjusted so semantics are fps-invariant.\"\"\"\n    speed = np.sqrt(center_x.diff()**2 + center_y.diff()**2) * float(fps)  # cm/s\n    w_ma = _scale(15, fps)\n    speed_ma = speed.rolling(w_ma, min_periods=max(1, w_ma // 3)).mean()\n\n    try:\n        # Original bins (cm/frame): [-inf, 0.5, 2.0, 5.0, inf]\n        # Convert to cm/s by multiplying by fps to keep thresholds consistent across fps.\n        bins = [-np.inf, 0.5 * fps, 2.0 * fps, 5.0 * fps, np.inf]\n        speed_states = pd.cut(speed_ma, bins=bins, labels=[0, 1, 2, 3]).astype(float)\n\n        for window in [60, 120]:\n            ws = _scale(window, fps)\n            if len(speed_states) >= ws:\n                for state in [0, 1, 2, 3]:\n                    X[f's{state}_{window}'] = (\n                        (speed_states == state).astype(float)\n                        .rolling(ws, min_periods=max(1, ws // 6)).mean()\n                    )\n                state_changes = (speed_states != speed_states.shift(1)).astype(float)\n                X[f'trans_{window}'] = state_changes.rolling(ws, min_periods=max(1, ws // 6)).sum()\n    except Exception:\n        pass\n\n    return X\n\ndef add_longrange_features(X, center_x, center_y, fps):\n    \"\"\"Long-range temporal features (windows & spans scaled by fps).\"\"\"\n    for window in [120, 240]:\n        ws = _scale(window, fps)\n        if len(center_x) >= ws:\n            X[f'x_ml{window}'] = center_x.rolling(ws, min_periods=max(5, ws // 6)).mean()\n            X[f'y_ml{window}'] = center_y.rolling(ws, min_periods=max(5, ws // 6)).mean()\n\n    # EWM spans also interpreted in frames\n    for span in [60, 120]:\n        s = _scale(span, fps)\n        X[f'x_e{span}'] = center_x.ewm(span=s, min_periods=1).mean()\n        X[f'y_e{span}'] = center_y.ewm(span=s, min_periods=1).mean()\n\n    speed = np.sqrt(center_x.diff()**2 + center_y.diff()**2) * float(fps)  # cm/s\n    for window in [60, 120]:\n        ws = _scale(window, fps)\n        if len(speed) >= ws:\n            X[f'sp_pct{window}'] = speed.rolling(ws, min_periods=max(5, ws // 6)).rank(pct=True)\n\n    return X\n\ndef add_cumulative_distance_single(X, cx, cy, fps, horizon_frames_base: int = 180, colname: str = \"path_cum180\"):\n    L = max(1, _scale(horizon_frames_base, fps))  # frames\n    # step length (cm per frame since coords are cm)\n    step = np.hypot(cx.diff(), cy.diff())\n    # centered rolling sum over ~2L+1 frames (acausal)\n    path = step.rolling(2*L + 1, min_periods=max(5, L//6), center=True).sum()\n    X[colname] = path.fillna(0.0).astype(np.float32)\n    return X\n\n\ndef add_groom_microfeatures(X, df, fps):\n    parts = df.columns.get_level_values(0)\n    if 'body_center' not in parts or 'nose' not in parts:\n        return X\n\n    cx = df['body_center']['x']; cy = df['body_center']['y']\n    nx = df['nose']['x']; ny = df['nose']['y']\n\n    cs = (np.sqrt(cx.diff()**2 + cy.diff()**2) * float(fps)).fillna(0)\n    ns = (np.sqrt(nx.diff()**2 + ny.diff()**2) * float(fps)).fillna(0)\n\n    w30 = _scale(30, fps)\n    X['head_body_decouple'] = (ns / (cs + 1e-3)).clip(0, 10).rolling(w30, min_periods=max(1, w30//3)).median()\n\n    r = np.sqrt((nx - cx)**2 + (ny - cy)**2)\n    X['nose_rad_std'] = r.rolling(w30, min_periods=max(1, w30//3)).std().fillna(0)\n\n    if 'tail_base' in parts:\n        ang = np.arctan2(df['nose']['y']-df['tail_base']['y'], df['nose']['x']-df['tail_base']['x'])\n        dang = np.abs(ang.diff()).fillna(0)\n        X['head_orient_jitter'] = dang.rolling(w30, min_periods=max(1, w30//3)).mean()\n\n    return X\n\n\ndef add_interaction_features(X, mouse_pair, avail_A, avail_B, fps):\n    \"\"\"Social interaction features (windows scaled by fps).\"\"\"\n    if 'body_center' not in avail_A or 'body_center' not in avail_B:\n        return X\n\n    rel_x = mouse_pair['A']['body_center']['x'] - mouse_pair['B']['body_center']['x']\n    rel_y = mouse_pair['A']['body_center']['y'] - mouse_pair['B']['body_center']['y']\n    rel_dist = np.sqrt(rel_x**2 + rel_y**2)\n\n    # per-frame velocities (cm/frame)\n    A_vx = mouse_pair['A']['body_center']['x'].diff()\n    A_vy = mouse_pair['A']['body_center']['y'].diff()\n    B_vx = mouse_pair['B']['body_center']['x'].diff()\n    B_vy = mouse_pair['B']['body_center']['y'].diff()\n\n    A_lead = (A_vx * rel_x + A_vy * rel_y) / (np.sqrt(A_vx**2 + A_vy**2) * rel_dist + 1e-6)\n    B_lead = (B_vx * (-rel_x) + B_vy * (-rel_y)) / (np.sqrt(B_vx**2 + B_vy**2) * rel_dist + 1e-6)\n\n    for window in [30, 60]:\n        ws = _scale(window, fps)\n        X[f'A_ld{window}'] = A_lead.rolling(ws, min_periods=max(1, ws // 6)).mean()\n        X[f'B_ld{window}'] = B_lead.rolling(ws, min_periods=max(1, ws // 6)).mean()\n\n    approach = -rel_dist.diff()  # decreasing distance => positive approach\n    chase = approach * B_lead\n    w = 30\n    ws = _scale(w, fps)\n    X[f'chase_{w}'] = chase.rolling(ws, min_periods=max(1, ws // 6)).mean()\n\n    for window in [60, 120]:\n        ws = _scale(window, fps)\n        A_sp = np.sqrt(A_vx**2 + A_vy**2)\n        B_sp = np.sqrt(B_vx**2 + B_vy**2)\n        X[f'sp_cor{window}'] = A_sp.rolling(ws, min_periods=max(1, ws // 6)).corr(B_sp)\n\n    return X\n\n# ===============================================================\n# 1) Past–vs–Future speed asymmetry (acausal, continuous)\n#    Δv = mean_future(speed) - mean_past(speed)\n# ===============================================================\ndef add_speed_asymmetry_future_past_single(\n    X: pd.DataFrame, cx: pd.Series, cy: pd.Series, fps: float,\n    horizon_base: int = 30, agg: str = \"mean\"\n) -> pd.DataFrame:\n    w = max(3, _scale(horizon_base, fps))\n    v = _speed(cx, cy, fps)\n    if agg == \"median\":\n        v_past = v.rolling(w, min_periods=max(3, w//4), center=False).median()\n        v_fut  = v.iloc[::-1].rolling(w, min_periods=max(3, w//4)).median().iloc[::-1]\n    else:\n        v_past = v.rolling(w, min_periods=max(3, w//4), center=False).mean()\n        v_fut  = _roll_future_mean(v, w, min_p=max(3, w//4))\n    X[\"spd_asym_1s\"] = (v_fut - v_past).fillna(0.0)\n    return X\n\n# ===============================================================\n# 2) Distribution shift (future vs past) via symmetric KL of\n#    Gaussian fits on speed \n# ===============================================================\ndef add_gauss_shift_speed_future_past_single(\n    X: pd.DataFrame, cx: pd.Series, cy: pd.Series, fps: float,\n    window_base: int = 30, eps: float = 1e-6\n) -> pd.DataFrame:\n    w = max(5, _scale(window_base, fps))\n    v = _speed(cx, cy, fps)\n\n    mu_p = v.rolling(w, min_periods=max(3, w//4)).mean()\n    va_p = v.rolling(w, min_periods=max(3, w//4)).var().clip(lower=eps)\n\n    mu_f = _roll_future_mean(v, w, min_p=max(3, w//4))\n    va_f = _roll_future_var(v, w, min_p=max(3, w//4)).clip(lower=eps)\n\n    # KL(Np||Nf) + KL(Nf||Np)\n    kl_pf = 0.5 * ((va_p/va_f) + ((mu_f - mu_p)**2)/va_f - 1.0 + np.log(va_f/va_p))\n    kl_fp = 0.5 * ((va_f/va_p) + ((mu_p - mu_f)**2)/va_p - 1.0 + np.log(va_p/va_f))\n    X[\"spd_symkl_1s\"] = (kl_pf + kl_fp).replace([np.inf, -np.inf], np.nan).fillna(0.0)\n    return X\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-11-10T09:28:25.660452Z","iopub.execute_input":"2025-11-10T09:28:25.661037Z","iopub.status.idle":"2025-11-10T09:28:25.694175Z","shell.execute_reply.started":"2025-11-10T09:28:25.661014Z","shell.execute_reply":"2025-11-10T09:28:25.693369Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"def add_temporal_context(X, fps):\n    \"\"\"Add lagged and forward-looking features for key columns\"\"\"\n    key_cols = [c for c in X.columns if any(k in c for k in ['disp', 'act', 'sp_m', 'd_m'])][:10]\n    \n    for col in key_cols:\n        for w in [30, 60]:\n            lag = _scale(w, fps)\n            X[f'{col}_lag{w}'] = X[col].shift(lag)\n            X[f'{col}_fwd{w}'] = X[col].shift(-lag)\n            X[f'{col}_diff{w}'] = X[col] - X[col].shift(lag)\n    \n    return X\n\ndef add_acceleration_features(X, cx, cy, fps):\n    \"\"\"Change 10: Second-order motion features\"\"\"\n    speed = np.sqrt(cx.diff()**2 + cy.diff()**2) * fps\n    accel = speed.diff() * fps\n    jerk = accel.diff() * fps\n    \n    for w in [15, 30]:\n        ws = _scale(w, fps)\n        X[f'accel_m{w}'] = accel.rolling(ws, min_periods=1).mean()\n        X[f'accel_s{w}'] = accel.rolling(ws, min_periods=1).std()\n        X[f'jerk_m{w}'] = jerk.rolling(ws, min_periods=1).mean()\n    \n    X['accel_sign'] = np.sign(accel).rolling(_scale(10, fps), min_periods=1).mean()\n    return X\n\n\ndef add_behavior_priors(X, fps):\n    \"\"\"Change 11: Recent activity context\"\"\"\n    if 'act30' in X.columns:\n        X['was_active_60'] = X['act30'].shift(_scale(60, fps)).fillna(0)\n        X['was_active_120'] = X['act30'].shift(_scale(120, fps)).fillna(0)\n        X['activity_trend'] = X['act30'] - X['was_active_60']\n    \n    if 'disp30' in X.columns:\n        X['was_moving_60'] = X['disp30'].shift(_scale(60, fps)).fillna(0)\n        X['movement_trend'] = X['disp30'] - X['was_moving_60']\n    return X","metadata":{"trusted":true},"outputs":[],"execution_count":null},{"cell_type":"code","source":"def transform_single(single_mouse, body_parts_tracked, fps):\n    \"\"\"Enhanced single mouse transform (FPS-aware windows/lags; distances in cm).\"\"\"\n    available_body_parts = single_mouse.columns.get_level_values(0)\n\n    X = pd.DataFrame({\n        f\"{p1}+{p2}\": np.square(single_mouse[p1] - single_mouse[p2]).sum(axis=1, skipna=False)\n        for p1, p2 in itertools.combinations(body_parts_tracked, 2)\n        if p1 in available_body_parts and p2 in available_body_parts\n    })\n    X = X.reindex(columns=[f\"{p1}+{p2}\" for p1, p2 in itertools.combinations(body_parts_tracked, 2)], copy=False)\n\n    if all(p in single_mouse.columns for p in ['ear_left', 'ear_right', 'tail_base']):\n        lag = _scale(10, fps)\n        shifted = single_mouse[['ear_left', 'ear_right', 'tail_base']].shift(lag)\n        speeds = pd.DataFrame({\n            'sp_lf': np.square(single_mouse['ear_left'] - shifted['ear_left']).sum(axis=1, skipna=False),\n            'sp_rt': np.square(single_mouse['ear_right'] - shifted['ear_right']).sum(axis=1, skipna=False),\n            'sp_lf2': np.square(single_mouse['ear_left'] - shifted['tail_base']).sum(axis=1, skipna=False),\n            'sp_rt2': np.square(single_mouse['ear_right'] - shifted['tail_base']).sum(axis=1, skipna=False),\n        })\n        X = pd.concat([X, speeds], axis=1)\n\n    if 'nose+tail_base' in X.columns and 'ear_left+ear_right' in X.columns:\n        X['elong'] = X['nose+tail_base'] / (X['ear_left+ear_right'] + 1e-6)\n\n    if all(p in available_body_parts for p in ['nose', 'body_center', 'tail_base']):\n        v1 = single_mouse['nose'] - single_mouse['body_center']\n        v2 = single_mouse['tail_base'] - single_mouse['body_center']\n        X['body_ang'] = (v1['x'] * v2['x'] + v1['y'] * v2['y']) / (\n            np.sqrt(v1['x']**2 + v1['y']**2) * np.sqrt(v2['x']**2 + v2['y']**2) + 1e-6)\n\n    if 'body_center' in available_body_parts:\n        cx = single_mouse['body_center']['x']\n        cy = single_mouse['body_center']['y']\n\n        for w in [5, 15, 30, 60]:\n            ws = _scale(w, fps)\n            roll = dict(min_periods=1, center=True)\n            X[f'cx_m{w}'] = cx.rolling(ws, **roll).mean()\n            X[f'cy_m{w}'] = cy.rolling(ws, **roll).mean()\n            X[f'cx_s{w}'] = cx.rolling(ws, **roll).std()\n            X[f'cy_s{w}'] = cy.rolling(ws, **roll).std()\n            X[f'x_rng{w}'] = cx.rolling(ws, **roll).max() - cx.rolling(ws, **roll).min()\n            X[f'y_rng{w}'] = cy.rolling(ws, **roll).max() - cy.rolling(ws, **roll).min()\n            X[f'disp{w}'] = np.sqrt(cx.diff().rolling(ws, min_periods=1).sum()**2 +\n                                     cy.diff().rolling(ws, min_periods=1).sum()**2)\n            X[f'act{w}'] = np.sqrt(cx.diff().rolling(ws, min_periods=1).var() +\n                                   cy.diff().rolling(ws, min_periods=1).var())\n\n        X = add_curvature_features(X, cx, cy, fps)\n        X = add_multiscale_features(X, cx, cy, fps)\n        X = add_state_features(X, cx, cy, fps)\n        X = add_longrange_features(X, cx, cy, fps)\n        X = add_cumulative_distance_single(X, cx, cy, fps, horizon_frames_base=180)\n        X = add_groom_microfeatures(X, single_mouse, fps)\n        X = add_speed_asymmetry_future_past_single(X, cx, cy, fps, horizon_base=30)         \n        X = add_gauss_shift_speed_future_past_single(X, cx, cy, fps, window_base=30)\n        X = add_acceleration_features(X, cx, cy, fps)  # Change 10\n  \n    if all(p in available_body_parts for p in ['nose', 'tail_base']):\n        nt_dist = np.sqrt((single_mouse['nose']['x'] - single_mouse['tail_base']['x'])**2 +\n                          (single_mouse['nose']['y'] - single_mouse['tail_base']['y'])**2)\n        for lag in [10, 20, 40]:\n            l = _scale(lag, fps)\n            X[f'nt_lg{lag}'] = nt_dist.shift(l)\n            X[f'nt_df{lag}'] = nt_dist - nt_dist.shift(l)\n\n    if all(p in available_body_parts for p in ['ear_left', 'ear_right']):\n        ear_d = np.sqrt((single_mouse['ear_left']['x'] - single_mouse['ear_right']['x'])**2 +\n                        (single_mouse['ear_left']['y'] - single_mouse['ear_right']['y'])**2)\n        for off in [-20, -10, 10, 20]:\n            o = _scale_signed(off, fps)\n            X[f'ear_o{off}'] = ear_d.shift(-o)  \n        w = _scale(30, fps)\n        X['ear_con'] = ear_d.rolling(w, min_periods=1, center=True).std() / \\\n                       (ear_d.rolling(w, min_periods=1, center=True).mean() + 1e-6)\n\n    X = add_behavior_priors(X, fps)  # Change 11\n    X = add_temporal_context(X, fps)\n    return X.astype(np.float32, copy=False)\n\ndef transform_pair(mouse_pair, body_parts_tracked, fps):\n    \"\"\"Enhanced pair transform (FPS-aware windows/lags; distances in cm).\"\"\"\n    avail_A = mouse_pair['A'].columns.get_level_values(0)\n    avail_B = mouse_pair['B'].columns.get_level_values(0)\n\n    X = pd.DataFrame({\n        f\"12+{p1}+{p2}\": np.square(mouse_pair['A'][p1] - mouse_pair['B'][p2]).sum(axis=1, skipna=False)\n        for p1, p2 in itertools.product(body_parts_tracked, repeat=2)\n        if p1 in avail_A and p2 in avail_B\n    })\n    X = X.reindex(columns=[f\"12+{p1}+{p2}\" for p1, p2 in itertools.product(body_parts_tracked, repeat=2)], copy=False)\n\n    if ('A', 'ear_left') in mouse_pair.columns and ('B', 'ear_left') in mouse_pair.columns:\n        lag = _scale(10, fps)\n        shA = mouse_pair['A']['ear_left'].shift(lag)\n        shB = mouse_pair['B']['ear_left'].shift(lag)\n        speeds = pd.DataFrame({\n            'sp_A': np.square(mouse_pair['A']['ear_left'] - shA).sum(axis=1, skipna=False),\n            'sp_AB': np.square(mouse_pair['A']['ear_left'] - shB).sum(axis=1, skipna=False),\n            'sp_B': np.square(mouse_pair['B']['ear_left'] - shB).sum(axis=1, skipna=False),\n        })\n        X = pd.concat([X, speeds], axis=1)\n\n    if 'nose+tail_base' in X.columns and 'ear_left+ear_right' in X.columns:\n        X['elong'] = X['nose+tail_base'] / (X['ear_left+ear_right'] + 1e-6)\n\n    if all(p in avail_A for p in ['nose', 'tail_base']) and all(p in avail_B for p in ['nose', 'tail_base']):\n        dir_A = mouse_pair['A']['nose'] - mouse_pair['A']['tail_base']\n        dir_B = mouse_pair['B']['nose'] - mouse_pair['B']['tail_base']\n        X['rel_ori'] = (dir_A['x'] * dir_B['x'] + dir_A['y'] * dir_B['y']) / (\n            np.sqrt(dir_A['x']**2 + dir_A['y']**2) * np.sqrt(dir_B['x']**2 + dir_B['y']**2) + 1e-6)\n\n    if all(p in avail_A for p in ['nose']) and all(p in avail_B for p in ['nose']):\n        cur = np.square(mouse_pair['A']['nose'] - mouse_pair['B']['nose']).sum(axis=1, skipna=False)\n        lag = _scale(10, fps)\n        shA_n = mouse_pair['A']['nose'].shift(lag)\n        shB_n = mouse_pair['B']['nose'].shift(lag)\n        past = np.square(shA_n - shB_n).sum(axis=1, skipna=False)\n        X['appr'] = cur - past\n\n    if 'body_center' in avail_A and 'body_center' in avail_B:\n        cd = np.sqrt((mouse_pair['A']['body_center']['x'] - mouse_pair['B']['body_center']['x'])**2 +\n                     (mouse_pair['A']['body_center']['y'] - mouse_pair['B']['body_center']['y'])**2)\n        X['v_cls'] = (cd < 5.0).astype(float)\n        X['cls']   = ((cd >= 5.0) & (cd < 15.0)).astype(float)\n        X['med']   = ((cd >= 15.0) & (cd < 30.0)).astype(float)\n        X['far']   = (cd >= 30.0).astype(float)\n\n    if 'body_center' in avail_A and 'body_center' in avail_B:\n        cd_full = np.square(mouse_pair['A']['body_center'] - mouse_pair['B']['body_center']).sum(axis=1, skipna=False)\n\n        for w in [5, 15, 30, 60]:\n            ws = _scale(w, fps)\n            roll = dict(min_periods=1, center=True)\n            X[f'd_m{w}']  = cd_full.rolling(ws, **roll).mean()\n            X[f'd_s{w}']  = cd_full.rolling(ws, **roll).std()\n            X[f'd_mn{w}'] = cd_full.rolling(ws, **roll).min()\n            X[f'd_mx{w}'] = cd_full.rolling(ws, **roll).max()\n\n            d_var = cd_full.rolling(ws, **roll).var()\n            X[f'int{w}'] = 1 / (1 + d_var)\n\n            Axd = mouse_pair['A']['body_center']['x'].diff()\n            Ayd = mouse_pair['A']['body_center']['y'].diff()\n            Bxd = mouse_pair['B']['body_center']['x'].diff()\n            Byd = mouse_pair['B']['body_center']['y'].diff()\n            coord = Axd * Bxd + Ayd * Byd\n            X[f'co_m{w}'] = coord.rolling(ws, **roll).mean()\n            X[f'co_s{w}'] = coord.rolling(ws, **roll).std()\n\n    if 'nose' in avail_A and 'nose' in avail_B:\n        nn = np.sqrt((mouse_pair['A']['nose']['x'] - mouse_pair['B']['nose']['x'])**2 +\n                     (mouse_pair['A']['nose']['y'] - mouse_pair['B']['nose']['y'])**2)\n        for lag in [10, 20, 40]:\n            l = _scale(lag, fps)\n            X[f'nn_lg{lag}']  = nn.shift(l)\n            X[f'nn_ch{lag}']  = nn - nn.shift(l)\n            is_cl = (nn < 10.0).astype(float)\n            X[f'cl_ps{lag}']  = is_cl.rolling(l, min_periods=1).mean()\n\n    if 'body_center' in avail_A and 'body_center' in avail_B:\n        Avx = mouse_pair['A']['body_center']['x'].diff()\n        Avy = mouse_pair['A']['body_center']['y'].diff()\n        Bvx = mouse_pair['B']['body_center']['x'].diff()\n        Bvy = mouse_pair['B']['body_center']['y'].diff()\n        val = (Avx * Bvx + Avy * Bvy) / (np.sqrt(Avx**2 + Avy**2) * np.sqrt(Bvx**2 + Bvy**2) + 1e-6)\n\n        for off in [-20, -10, 0, 10, 20]:\n            o = _scale_signed(off, fps)\n            X[f'va_{off}'] = val.shift(-o)\n\n        w = _scale(30, fps)\n        X['int_con'] = cd_full.rolling(w, min_periods=1, center=True).std() / \\\n                       (cd_full.rolling(w, min_periods=1, center=True).mean() + 1e-6)\n\n        X = add_interaction_features(X, mouse_pair, avail_A, avail_B, fps)\n\n        # Change 13: Pair asymmetry features\n        A_speed = np.sqrt(Avx**2 + Avy**2) * fps\n        B_speed = np.sqrt(Bvx**2 + Bvy**2) * fps\n        \n        X['speed_ratio_AB'] = A_speed / (B_speed + 1e-6)\n        X['speed_diff_AB'] = A_speed - B_speed\n        X['A_is_faster'] = (A_speed > B_speed).astype(float)\n        \n        X['A_approaching'] = (X.get('A_ld30', 0) > 0.3).astype(float) if 'A_ld30' in X.columns else 0\n        X['B_approaching'] = (X.get('B_ld30', 0) > 0.3).astype(float) if 'B_ld30' in X.columns else 0\n        \n        A_accel = A_speed.diff() * fps\n        B_accel = B_speed.diff() * fps\n        X['accel_diff_AB'] = A_accel - B_accel\n        \n        for w in [15, 30]:\n            ws = _scale(w, fps)\n            X[f'A_accel_m{w}'] = A_accel.rolling(ws, min_periods=1).mean()\n            X[f'B_accel_m{w}'] = B_accel.rolling(ws, min_periods=1).mean()\n\n    X = add_behavior_priors(X, fps)  # Change 11\n    X = add_temporal_context(X, fps)\n    return X.astype(np.float32, copy=False)","metadata":{"trusted":true},"outputs":[],"execution_count":null},{"cell_type":"code","source":"# helpers\ndef _find_lgbm_step(pipe):\n    try:\n        if \"stratifiedsubsetclassifier__estimator\" in pipe.get_params():\n            est = pipe.get_params()[\"stratifiedsubsetclassifier__estimator\"]\n            if isinstance(est, lightgbm.LGBMClassifier):\n                return \"stratifiedsubsetclassifier\"\n        if \"stratifiedsubsetclassifierweval__estimator\" in pipe.get_params():\n            est = pipe.get_params()[\"stratifiedsubsetclassifierweval__estimator\"]\n            if isinstance(est, lightgbm.LGBMClassifier):\n                return \"stratifiedsubsetclassifierweval\"\n    except Exception as e:\n        print(e)\n    return None\n","metadata":{"trusted":true,"jupyter":{"source_hidden":true}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"def get_adaptive_thresholds(label_df):\n    \"\"\"Change 14: Lower thresholds to catch more events\"\"\"\n    thresholds = {}\n    for col in label_df.columns:\n        pos_rate = label_df[col].mean()\n        if pos_rate < 0.005:\n            thresholds[col] = 0.15\n        elif pos_rate < 0.02:\n            thresholds[col] = 0.19\n        elif pos_rate < 0.05:\n            thresholds[col] = 0.24\n        else:\n            thresholds[col] = 0.29\n    return defaultdict(lambda: 0.24, thresholds)","metadata":{"trusted":true},"outputs":[],"execution_count":null},{"cell_type":"code","source":"def submit_ensemble(body_parts_tracked_str, switch_tr, X_tr, label, meta, n_samples=1_500_000):\n    models = []\n    models.append(make_pipeline(\n        StratifiedSubsetClassifier(_make_lgbm(\n            n_estimators=225, learning_rate=0.07, min_child_samples=40,\n            num_leaves=31, subsample=0.8, colsample_bytree=0.8, verbose=-1, gpu_use_dp=USE_GPU\n        ), n_samples)\n    ))\n    models.append(make_pipeline(\n        StratifiedSubsetClassifier(_make_lgbm(\n            n_estimators=150, learning_rate=0.1, min_child_samples=20,\n            num_leaves=63, max_depth=8, subsample=0.7, colsample_bytree=0.9,\n            reg_alpha=0.1, reg_lambda=0.1, verbose=-1, gpu_use_dp=USE_GPU\n        ), (n_samples and int(n_samples/1.25)))\n    ))\n    models.append(make_pipeline(\n        StratifiedSubsetClassifier(_make_lgbm(\n            n_estimators=100, learning_rate=0.05, min_child_samples=30,\n            num_leaves=127, max_depth=10, subsample=0.75, verbose=-1, gpu_use_dp=USE_GPU,\n        ), (n_samples and int(n_samples/1.66)))\n    ))\n\n    xgb0 = _make_xgb(\n        n_estimators=180, learning_rate=0.08, max_depth=6,\n        min_child_weight=8 if USE_GPU else 5, gamma=1.0 if USE_GPU else 0.,\n        subsample=0.8, colsample_bytree=0.8, single_precision_histogram=USE_GPU,\n        verbosity=0\n    )\n    models.append(make_pipeline(StratifiedSubsetClassifier(xgb0, n_samples and int(n_samples/1.2))))\n\n    cb_est = _make_cb(iterations=120, learning_rate=0.1, depth=6,\n                      verbose=False, allow_writing_files=False)\n    models.append(make_pipeline(StratifiedSubsetClassifier(cb_est, n_samples)))\n\n    model_names = ['lgbm_225', 'lgbm_150', 'lgbm_100', 'xgb_180', 'cat_120']\n\n    if USE_GPU:\n        xgb1 = XGBClassifier(\n            random_state=SEED, booster=\"gbtree\", tree_method=\"gpu_hist\",\n            n_estimators=2000, learning_rate=0.05, grow_policy=\"lossguide\",\n            max_leaves=255, max_depth=0, min_child_weight=10, gamma=0.0,\n            subsample=0.90, colsample_bytree=1.00, colsample_bylevel=0.85,\n            reg_alpha=0.0, reg_lambda=1.0, max_bin=256,\n            single_precision_histogram=True, verbosity=0\n        )\n        models.append(make_pipeline(\n            StratifiedSubsetClassifierWEval(xgb1, n_samples and int(n_samples/2.),\n                                            random_state=SEED, valid_size=0.10, val_cap_ratio=0.25,\n                                            es_rounds=\"auto\", es_metric=\"auto\")\n        ))\n        xgb2 = XGBClassifier(\n            random_state=SEED, booster=\"gbtree\", tree_method=\"gpu_hist\",\n            n_estimators=1400, learning_rate=0.06, max_depth=7,\n            min_child_weight=12, subsample=0.70, colsample_bytree=0.80,\n            reg_alpha=0.0, reg_lambda=1.5, max_bin=256,\n            single_precision_histogram=True, verbosity=0\n        )\n        models.append(make_pipeline(\n            StratifiedSubsetClassifierWEval(xgb2, n_samples and int(n_samples/1.5),\n                                            random_state=SEED, valid_size=0.10, val_cap_ratio=0.25,\n                                            es_rounds=\"auto\", es_metric=\"auto\")\n        ))\n\n        cb1 = CatBoostClassifier(\n            random_seed=SEED, task_type=\"GPU\", devices=\"0\",\n            iterations=4000, learning_rate=0.03, depth=8, l2_leaf_reg=6.0,\n            bootstrap_type=\"Bayesian\", bagging_temperature=0.5,\n            random_strength=0.5, loss_function=\"Logloss\",\n            eval_metric=\"PRAUC:type=Classic\", auto_class_weights=\"Balanced\",\n            border_count=64, verbose=False, allow_writing_files=False\n        )\n        models.append(make_pipeline(\n            StratifiedSubsetClassifierWEval(cb1, n_samples and int(n_samples/2.0),\n                                            random_state=SEED, valid_size=0.10, val_cap_ratio=0.25,\n                                            es_rounds=\"auto\", es_metric=\"auto\")\n        ))\n        model_names.extend(['xgb1', 'xgb2', 'cat_bay'])\n\n    learned_thresholds = get_adaptive_thresholds(label)\n    \n    model_list = []\n    for action in label.columns:\n        action_mask = ~label[action].isna().values\n        y_action = label[action][action_mask].values.astype(int)\n        meta_masked = meta.iloc[action_mask]\n  \n        trained = []\n        for model_idx, m in enumerate(models):\n            m_clone = clone(m)\n            try:\n                t0 = perf_counter()\n                m_clone.fit(X_tr[action_mask], y_action)\n                dt = perf_counter() - t0\n                print(f\"trained model {model_names[model_idx]} | {switch_tr} | action={action} | {dt:.1f}s\", flush=True)\n            except Exception:\n                step = _find_lgbm_step(m_clone)\n                if step is None:\n                    continue\n                try:\n                    m_clone.set_params(**{f\"{step}__estimator__device\": \"cpu\"})\n                    t0 = perf_counter()\n                    m_clone.fit(X_tr[action_mask], y_action)\n                    dt = perf_counter() - t0\n                    print(f\"trained (CPU fallback) {model_names[model_idx]} | {switch_tr} | action={action} | {dt:.1f}s\", flush=True)\n                except Exception as e2:\n                    print(e2)\n                    continue\n            trained.append(m_clone)\n\n        if trained:\n            model_list.append((action, trained))\n\n    del X_tr; gc.collect()\n\n    # ---- TEST INFERENCE ----\n    body_parts_tracked = json.loads(body_parts_tracked_str)\n    if len(body_parts_tracked) > 5:\n        body_parts_tracked = [b for b in body_parts_tracked if b not in drop_body_parts]\n\n    test_subset = test[test.body_parts_tracked == body_parts_tracked_str]\n    generator = generate_mouse_data(\n        test_subset, 'test',\n        generate_single=(switch_tr == 'single'),\n        generate_pair=(switch_tr == 'pair')\n    )\n    fps_lookup = (test_subset[['video_id','frames_per_second']]\n                    .drop_duplicates('video_id')\n                    .set_index('video_id')['frames_per_second'].to_dict())\n\n    for switch_te, data_te, meta_te, actions_te in generator:\n        assert switch_te == switch_tr\n        try:\n            fps_i = _fps_from_meta(meta_te, fps_lookup, default_fps=30.0)\n            if switch_te == 'single':\n                X_te = transform_single(data_te, body_parts_tracked, fps_i)\n            else:\n                X_te = transform_pair(data_te, body_parts_tracked, fps_i)\n\n            del data_te\n\n            pred = pd.DataFrame(index=meta_te.video_frame)\n            for action, trained in model_list:\n                if action in actions_te:\n                    probs = []\n                    for mi, mdl in enumerate(trained):\n                        probs.append(mdl.predict_proba(X_te)[:, 1])\n                    pred[action] = np.mean(probs, axis=0)\n\n            del X_te; gc.collect()\n\n            if pred.shape[1] != 0:\n                submission_list.append(predict_multiclass_adaptive(pred, meta_te, learned_thresholds))\n        except Exception as e:\n            print(e)\n            try: del data_te\n            except: pass\n            gc.collect()\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-11-10T09:28:25.743965Z","iopub.execute_input":"2025-11-10T09:28:25.744127Z","iopub.status.idle":"2025-11-10T09:28:25.762133Z","shell.execute_reply.started":"2025-11-10T09:28:25.744114Z","shell.execute_reply":"2025-11-10T09:28:25.761535Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"def robustify(submission, dataset, traintest, traintest_directory=None):\n    if traintest_directory is None:\n        traintest_directory = f\"/kaggle/input/MABe-mouse-behavior-detection/{traintest}_tracking\"\n\n    submission = submission[submission.start_frame < submission.stop_frame]\n\n    group_list = []\n    for _, group in submission.groupby(['video_id', 'agent_id', 'target_id']):\n        group = group.sort_values('start_frame')\n        mask = np.ones(len(group), dtype=bool)\n        last_stop = 0\n        for i, (_, row) in enumerate(group.iterrows()):\n            if row['start_frame'] < last_stop:\n                mask[i] = False\n            else:\n                last_stop = row['stop_frame']\n        group_list.append(group[mask])\n    submission = pd.concat(group_list) if group_list else submission\n\n    s_list = []\n    for _, row in dataset.iterrows():\n        lab_id = row['lab_id']\n        video_id = row['video_id']\n        if (submission.video_id == video_id).any():\n            continue\n\n        if verbose:\n            print(f\"Video {video_id} has no predictions\")\n\n        path = f\"{traintest_directory}/{lab_id}/{video_id}.parquet\"\n        vid = pd.read_parquet(path)\n\n        vid_behaviors = eval(row['behaviors_labeled'])\n        vid_behaviors = sorted(list({b.replace(\"'\", \"\") for b in vid_behaviors}))\n        vid_behaviors = [b.split(',') for b in vid_behaviors]\n        vid_behaviors = pd.DataFrame(vid_behaviors, columns=['agent', 'target', 'action'])\n\n        start_frame = vid.video_frame.min()\n        stop_frame = vid.video_frame.max() + 1\n\n        for (agent, target), actions in vid_behaviors.groupby(['agent', 'target']):\n            batch_len = int(np.ceil((stop_frame - start_frame) / len(actions)))\n            for i, (_, action_row) in enumerate(actions.iterrows()):\n                batch_start = start_frame + i * batch_len\n                batch_stop = min(batch_start + batch_len, stop_frame)\n                s_list.append((video_id, agent, target, action_row['action'], batch_start, batch_stop))\n\n    if len(s_list) > 0:\n        submission = pd.concat([\n            submission,\n            pd.DataFrame(s_list, columns=['video_id', 'agent_id', 'target_id', 'action', 'start_frame', 'stop_frame'])\n        ])\n\n    submission = submission.reset_index(drop=True)\n    return submission","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-11-10T09:28:25.762907Z","iopub.execute_input":"2025-11-10T09:28:25.763178Z","iopub.status.idle":"2025-11-10T09:28:25.778439Z","shell.execute_reply.started":"2025-11-10T09:28:25.763161Z","shell.execute_reply":"2025-11-10T09:28:25.777851Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"# ==================== MAIN LOOP ====================\n\nsubmission_list = []\n\nfor section in range(len(body_parts_tracked_list)):\n    body_parts_tracked_str = body_parts_tracked_list[section]\n    try:\n        body_parts_tracked = json.loads(body_parts_tracked_str)\n        print(f\"{section}. Processing: {len(body_parts_tracked)} body parts\")\n        if len(body_parts_tracked) > 5:\n            body_parts_tracked = [b for b in body_parts_tracked if b not in drop_body_parts]\n\n        train_subset = train[train.body_parts_tracked == body_parts_tracked_str]\n\n        _fps_lookup = (\n            train_subset[['video_id', 'frames_per_second']]\n            .drop_duplicates('video_id')\n            .set_index('video_id')['frames_per_second']\n            .to_dict()\n        )\n\n        single_list, single_label_list, single_meta_list = [], [], []\n        pair_list, pair_label_list, pair_meta_list = [], [], []\n\n        for switch, data, meta, label in generate_mouse_data(train_subset, 'train'):\n            if switch == 'single':\n                single_list.append(data)\n                single_meta_list.append(meta)\n                single_label_list.append(label)\n            else:\n                pair_list.append(data)\n                pair_meta_list.append(meta)\n                pair_label_list.append(label)\n\n        if len(single_list) > 0:\n            single_feats_parts = []\n            for data_i, meta_i in zip(single_list, single_meta_list):\n                fps_i = _fps_from_meta(meta_i, _fps_lookup, default_fps=30.0)\n                Xi = transform_single(data_i, body_parts_tracked, fps_i).astype(np.float32)\n                single_feats_parts.append(Xi)\n\n            X_tr = pd.concat(single_feats_parts, axis=0, ignore_index=True)\n \n            single_label = pd.concat(single_label_list, axis=0, ignore_index=True)\n            single_meta  = pd.concat(single_meta_list,  axis=0, ignore_index=True)\n\n            del single_list, single_label_list, single_meta_list, single_feats_parts\n            gc.collect()\n\n            print(f\"  Single: {X_tr.shape}\")\n            submit_ensemble(body_parts_tracked_str, 'single', X_tr, single_label, single_meta)\n\n            del X_tr, single_label, single_meta\n            gc.collect()\n\n        if len(pair_list) > 0:\n            pair_feats_parts = []\n            for data_i, meta_i in zip(pair_list, pair_meta_list):\n                fps_i = _fps_from_meta(meta_i, _fps_lookup, default_fps=30.0)\n                Xi = transform_pair(data_i, body_parts_tracked, fps_i).astype(np.float32)\n                pair_feats_parts.append(Xi)\n\n            X_tr = pd.concat(pair_feats_parts, axis=0, ignore_index=True)\n\n            \n            pair_label = pd.concat(pair_label_list, axis=0, ignore_index=True)\n            pair_meta  = pd.concat(pair_meta_list,  axis=0, ignore_index=True)\n\n            del pair_list, pair_label_list, pair_meta_list, pair_feats_parts\n            gc.collect()\n\n            print(f\"  Pair: {X_tr.shape}\")\n            submit_ensemble(body_parts_tracked_str, 'pair', X_tr, pair_label, pair_meta)\n\n            del X_tr, pair_label, pair_meta\n            gc.collect()\n\n    except Exception as e:\n        print(f'***Exception*** {str(e)[:100]}')\n\n    gc.collect()\n    print()\n\nif len(submission_list) > 0:\n    submission = pd.concat(submission_list, ignore_index=True)\nelse:\n    submission = pd.DataFrame({\n        'video_id': [438887472],\n        'agent_id': ['mouse1'],\n        'target_id': ['self'],\n        'action': ['rear'],\n        'start_frame': [278],\n        'stop_frame': [500]\n    })\n\nsubmission_robust = robustify(submission, test, 'test')\nsubmission_robust.index.name = 'row_id'\nsubmission_robust.to_csv('submission.csv')\nprint(f\"\\nSubmission created: {len(submission_robust)} predictions\")\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-11-10T09:28:25.779125Z","iopub.execute_input":"2025-11-10T09:28:25.7793Z"}},"outputs":[],"execution_count":null}]}