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  "source_url": "https://www.kaggle.com/competitions/bioresponse/data",
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    {
      "name": "Description",
      "content": "<p>The objective of the competition is to help us build as good a model as possible so that we can, as optimally as this data allows, relate molecular information, to an actual biological response.</p>\r\n<p>We have shared the data in the comma separated values (CSV) format. Each row in this data set represents a molecule. The first column contains experimental data describing an actual biological response; the molecule was seen to elicit this response (1),\r\n or not (0). The remaining columns represent molecular descriptors (d1 through d1776), these are calculated properties that can capture some of the characteristics of the molecule - for example size, shape, or elemental constitution. The descriptor matrix has\r\n been normalized.</p>",
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      "name": "Rules",
      "content": "\r\n\t<!-- Begin Base Rules -->\r\n    <h3>One account per participant</h3>\r\n    <p>You cannot sign up to Kaggle from multiple accounts and therefore you cannot submit from multiple accounts.</p>\r\n    <h3>No private sharing outside teams</h3>\r\n    <p>\r\n        Privately sharing code or data outside of teams is not permitted.\r\n        It's okay to share code if made available to all participants on the forums.\r\n    </p>\r\n    <h3>Team Mergers</h3>\r\n    <p>\r\n        Team mergers are allowed and can be performed by the team leader. In order to merge, the combined team must have a total submission count less than or equal to the maximum allowed as of the merge date. The maximum allowed is the number of submissions per day multiplied by the number of days the competition has been running.<br/>\r\n    </p>\r\n\r\n    <h3>Team Limits</h3>\r\n    <p>There is no maximum team size.</p>\r\n    <h3>Submission Limits</h3>\r\n    <p>You may submit a maximum of 2 entries per day.</p>\r\n    <p>You may select up to 5 final submissions for judging.</p>\r\n    <h3>Protection Against Handmade Entries</h3>\r\n    <p>\r\n        Because the data can be manually decoded and thus an entry can be created by hand, scoring data will be withheld until you have locked down a model.\r\n    </p>\r\n    <h3>Additional Submission Data</h3>\r\n    <p>\r\n        You must upload all kernels and model files alongside documentation in a single zip file\r\n        in order for your entry to be eligible. You can do this at the time of submission, or append\r\n        it to your submission at a later time (before the competition end).\r\n    </p>\r\n    <h3>Competition Timeline</h3>\r\n    <p>Start Date: <strong>3/16/2012 7:10 PM UTC</strong></p>\r\n    <p>Merger Deadline: <strong>None</strong></p>\r\n    <p>Entry Deadline: <strong>None</strong></p>\r\n    <p>End Date: <strong>6/15/2012 11:59 PM UTC</strong></p>\r\n\t<!-- End Base Rules -->\r\n<ol>\r\n<li>Winning participants are required to provide code, as well as a description of their algorithm in document form.\r\n</li><li>All participants are encouraged to provide code and documentation of their methods.\r\n</li><li>Papers may be written summarizing the results from the Predicting a Biological Response Challenge. By submitting an entry into the challenge you agree that a discussion of the method may appear in these papers.\r\n</li><li>Participants will not use data other than that provided to estimate their model.\r\n</li><li>A modified version of the terms and conditions apply to this competition, which can be downloaded\r\n<a href=\"https://storage.googleapis.com/kaggle-media/competitions/kaggle/2780/media/BIPI-Kaggle%20Modified%20Terms%20and%20Conditions%2002.21.12.DOCX\">\r\nhere</a>. </li><li>If necessary, the competition host may modify the training and/or testing dataset to address any problems/issues that come up during the competition.\r\n</li></ol>",
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      "name": "Evaluation",
      "content": "<p>Predicted probabilities that a molecule elicits a response are evaluated using the log loss metric.</p>\r\n<p>Log loss is defined as:</p>\r\n<p><span style=\"font-size:large\">$$\\text{log loss}=-\\frac{1}{N}\\sum_{i=1}^Ny_i\\log\\left(\\hat{y_i}\\right)&#43;\\left(1-y_i\\right)\\log\\left(1-\\hat{y_i}\\right),$$</span></p>\r\n<p>where<span style=\"font-size:medium\"> \\\\(N\\\\)&nbsp;</span>is the number of samples, <span style=\"font-size:medium\">\r\n\\\\(\\text{log}\\\\)</span> is the natural logarithm,&nbsp;<span style=\"font-size:medium\">\\\\(\\hat{y_i}\\\\)</span> is the posterior probability that the\r\n<span style=\"font-size:medium\">\\\\(i^{th}\\\\)</span>&nbsp;sample elicited a response, and\r\n<span style=\"font-size:medium\">\\\\(y_i\\\\)</span> is the ground truth <span style=\"font-size:medium\">\r\n(\\\\(y_i=1\\\\)</span> means the molecule elicited a response, <span style=\"font-size:medium\">\r\n\\\\(y_i=0\\\\)</span> means that it did not).</p>",
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    {
      "name": "Prizes",
      "content": "<ol>\r\n<li>A cash prize of $10000 </li><li>A cash prize of $6000 </li><li>A cash prize of $4000 </li></ol>",
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      "name": "data-description",
      "content": "<p><a href=\"https://github.com/benhamner/BioResponse\">Code for benchmarks</a></p>\r\n<p>The data is in the comma separated values (CSV) format. Each row in this data set represents a molecule. The first column contains experimental data describing a real biological response; the molecule was seen to elicit this response (1), or not (0). The\r\n remaining columns represent molecular descriptors (d1 through d1776), these are caclulated properties that can capture some of the characteristics of the molecule - for example size, shape, or elemental constitution. The descriptor matrix has been normalized.</p>",
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