{
  "id": 402560,
  "title": "🧬 Useful Resources List 🧬",
  "url": "/competitions/cafa-5-protein-function-prediction/discussion/402560",
  "author_name": "",
  "post_date": "2023-04-18T21:14:42.869627700Z",
  "votes": 25,
  "comment_count": 2,
  "views": 0,
  "content": "<p>Gene Ontology overview (Molecular Function (MF), Biological Process (BP), and Cellular Component (CC))<br>\n<a href=\"http://geneontology.org/docs/ontology-documentation/\" target=\"_blank\">http://geneontology.org/docs/ontology-documentation/</a></p>\n<p>GO Hierarchy<br>\n<a href=\"https://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/cgi-bin/go.cgi\" target=\"_blank\">https://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/cgi-bin/go.cgi</a></p>\n<p>GOTrapper: a tool to navigate through branches of gene ontology hierarchy<br>\n<a href=\"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2581-8\" target=\"_blank\">https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2581-8</a></p>\n<p>The Gene Ontology Consortium (GOC) provides the main GO annotation dataset, which contains annotations for over 4 million gene products from various organisms. <br>\n<a href=\"http://geneontology.org/docs/download-ontology/\" target=\"_blank\">http://geneontology.org/docs/download-ontology/</a></p>\n<p>Noctua is a web-based, collaborative Gene Ontology (GO) annotation tool developed by the GO Consortium.<br>\n<a href=\"http://noctua.geneontology.org/workbench/noctua-landing-page/\" target=\"_blank\">http://noctua.geneontology.org/workbench/noctua-landing-page/</a></p>\n<p>The GO graph<br>\n<img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F1313949%2Fefcc55ae8c9156423734f77702f9f908%2Fhexose-biosynthetic-process.png?generation=1681852722078191&amp;alt=media\" alt=\"\"></p>",
  "messages": [
    {
      "id": "2226347",
      "postDate": "04/18/2023 21:14:42",
      "content": "<p>Gene Ontology overview (Molecular Function (MF), Biological Process (BP), and Cellular Component (CC))<br>\n<a href=\"http://geneontology.org/docs/ontology-documentation/\" target=\"_blank\">http://geneontology.org/docs/ontology-documentation/</a></p>\n<p>GO Hierarchy<br>\n<a href=\"https://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/cgi-bin/go.cgi\" target=\"_blank\">https://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/cgi-bin/go.cgi</a></p>\n<p>GOTrapper: a tool to navigate through branches of gene ontology hierarchy<br>\n<a href=\"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2581-8\" target=\"_blank\">https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2581-8</a></p>\n<p>The Gene Ontology Consortium (GOC) provides the main GO annotation dataset, which contains annotations for over 4 million gene products from various organisms. <br>\n<a href=\"http://geneontology.org/docs/download-ontology/\" target=\"_blank\">http://geneontology.org/docs/download-ontology/</a></p>\n<p>Noctua is a web-based, collaborative Gene Ontology (GO) annotation tool developed by the GO Consortium.<br>\n<a href=\"http://noctua.geneontology.org/workbench/noctua-landing-page/\" target=\"_blank\">http://noctua.geneontology.org/workbench/noctua-landing-page/</a></p>\n<p>The GO graph<br>\n<img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F1313949%2Fefcc55ae8c9156423734f77702f9f908%2Fhexose-biosynthetic-process.png?generation=1681852722078191&amp;alt=media\" alt=\"\"></p>",
      "rawMarkdown": "Gene Ontology overview (Molecular Function (MF), Biological Process (BP), and Cellular Component (CC))\nhttp://geneontology.org/docs/ontology-documentation/\n\nGO Hierarchy\nhttps://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/cgi-bin/go.cgi\n\nGOTrapper: a tool to navigate through branches of gene ontology hierarchy\nhttps://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2581-8\n\nThe Gene Ontology Consortium (GOC) provides the main GO annotation dataset, which contains annotations for over 4 million gene products from various organisms. \nhttp://geneontology.org/docs/download-ontology/\n\nNoctua is a web-based, collaborative Gene Ontology (GO) annotation tool developed by the GO Consortium.\nhttp://noctua.geneontology.org/workbench/noctua-landing-page/\n\nThe GO graph\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F1313949%2Fefcc55ae8c9156423734f77702f9f908%2Fhexose-biosynthetic-process.png?generation=1681852722078191&alt=media)",
      "votes": null
    },
    {
      "id": "2226731",
      "postDate": "04/19/2023 07:01:01",
      "content": "<p>I'd add uniprot and GOAtools to that</p>",
      "rawMarkdown": "I'd add uniprot and GOAtools to that",
      "votes": null
    },
    {
      "id": "2226794",
      "postDate": "04/19/2023 08:10:42",
      "content": "<p>thanks for advice!</p>",
      "rawMarkdown": "thanks for advice!",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 2226731,
      "author_name": "danofer",
      "author_url": "",
      "post_date": "04/19/2023 07:01:01",
      "content": "<p>I'd add uniprot and GOAtools to that</p>",
      "votes": null,
      "replies": [
        {
          "id": 2226794,
          "author_name": "ihelon",
          "author_url": "",
          "post_date": "04/19/2023 08:10:42",
          "content": "<p>thanks for advice!</p>",
          "votes": null,
          "replies": []
        }
      ]
    }
  ],
  "raw_markdown_by_id": {
    "2226347": "Gene Ontology overview (Molecular Function (MF), Biological Process (BP), and Cellular Component (CC))\nhttp://geneontology.org/docs/ontology-documentation/\n\nGO Hierarchy\nhttps://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/cgi-bin/go.cgi\n\nGOTrapper: a tool to navigate through branches of gene ontology hierarchy\nhttps://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2581-8\n\nThe Gene Ontology Consortium (GOC) provides the main GO annotation dataset, which contains annotations for over 4 million gene products from various organisms. \nhttp://geneontology.org/docs/download-ontology/\n\nNoctua is a web-based, collaborative Gene Ontology (GO) annotation tool developed by the GO Consortium.\nhttp://noctua.geneontology.org/workbench/noctua-landing-page/\n\nThe GO graph\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F1313949%2Fefcc55ae8c9156423734f77702f9f908%2Fhexose-biosynthetic-process.png?generation=1681852722078191&alt=media)",
    "2226731": "I'd add uniprot and GOAtools to that",
    "2226794": "thanks for advice!"
  },
  "source": "meta"
}