{
  "id": 412072,
  "title": "API code snipet for Meta ESMFold",
  "url": "/competitions/cafa-5-protein-function-prediction/discussion/412072",
  "author_name": "Cafelatte1",
  "post_date": "2023-05-22T06:50:35.940000",
  "votes": 6,
  "comment_count": 0,
  "views": 0,
  "content": "<p>There is another tool Meta 'ESMFold' for getting the protein structure data from PDB, in addition to AlphaFold<br>\n<strong>ESM's pLDDT prediction range is 0-1</strong> (AlphaFold 0-100)<br>\n<strong>ESM predicts all amino acids' pLDDT</strong> which is differenct from AlphaFold predicting the all amino acids with same value<br>\nAs far as I know, we can use API for ESM but not AlphaFold's one (You should download model &amp; infer in hand)<br>\nWe can utilize this feature since the test data will be unchanged !<br>\n<a href=\"https://esmatlas.com/about#introduction\" target=\"_blank\">documentation link</a></p>\n<pre><code> os\nos.system()\ntime.sleep()\n</code></pre>",
  "messages": [
    {
      "id": 2269002,
      "postDate": "2023-05-22T06:50:35.940Z",
      "content": "<p>There is another tool Meta 'ESMFold' for getting the protein structure data from PDB, in addition to AlphaFold<br>\n<strong>ESM's pLDDT prediction range is 0-1</strong> (AlphaFold 0-100)<br>\n<strong>ESM predicts all amino acids' pLDDT</strong> which is differenct from AlphaFold predicting the all amino acids with same value<br>\nAs far as I know, we can use API for ESM but not AlphaFold's one (You should download model &amp; infer in hand)<br>\nWe can utilize this feature since the test data will be unchanged !<br>\n<a href=\"https://esmatlas.com/about#introduction\" target=\"_blank\">documentation link</a></p>\n<pre><code> os\nos.system()\ntime.sleep()\n</code></pre>",
      "rawMarkdown": "There is another tool Meta 'ESMFold' for getting the protein structure data from PDB, in addition to AlphaFold\n**ESM's pLDDT prediction range is 0-1** (AlphaFold 0-100)\n**ESM predicts all amino acids' pLDDT** which is differenct from AlphaFold predicting the all amino acids with same value\nAs far as I know, we can use API for ESM but not AlphaFold's one (You should download model & infer in hand)\nWe can utilize this feature since the test data will be unchanged !\n[documentation link](https://esmatlas.com/about#introduction)\n\n```python\nimport os\nos.system(f'curl -X POST --data \"{protein_sequence}\" https://api.esmatlas.com/foldSequence/v1/pdb/ > {file_name}.pdb')\ntime.sleep(1)\n```",
      "votes": 6
    }
  ],
  "comments": [],
  "raw_markdown_by_id": {
    "2269002": "There is another tool Meta 'ESMFold' for getting the protein structure data from PDB, in addition to AlphaFold\n**ESM's pLDDT prediction range is 0-1** (AlphaFold 0-100)\n**ESM predicts all amino acids' pLDDT** which is differenct from AlphaFold predicting the all amino acids with same value\nAs far as I know, we can use API for ESM but not AlphaFold's one (You should download model & infer in hand)\nWe can utilize this feature since the test data will be unchanged !\n[documentation link](https://esmatlas.com/about#introduction)\n\n```python\nimport os\nos.system(f'curl -X POST --data \"{protein_sequence}\" https://api.esmatlas.com/foldSequence/v1/pdb/ > {file_name}.pdb')\ntime.sleep(1)\n```"
  }
}