{
  "id": 415326,
  "title": "Is there any way to apply a GNN on this data?",
  "url": "/competitions/cafa-5-protein-function-prediction/discussion/415326",
  "author_name": "",
  "post_date": "2023-06-06T03:12:35.674621700Z",
  "votes": 5,
  "comment_count": 1,
  "views": 0,
  "content": "<p>Since the go graph is a grpah, is it possible to use a gnn on it? But how to get the graph?</p>",
  "messages": [
    {
      "id": "2289237",
      "postDate": "06/06/2023 03:12:35",
      "content": "<p>Since the go graph is a grpah, is it possible to use a gnn on it? But how to get the graph?</p>",
      "rawMarkdown": "Since the go graph is a grpah, is it possible to use a gnn on it? But how to get the graph?",
      "votes": null
    },
    {
      "id": "2313345",
      "postDate": "06/22/2023 15:49:00",
      "content": "<p>There is a Python library called obonet (<a href=\"https://github.com/dhimmel/obonet\" target=\"_blank\">https://github.com/dhimmel/obonet</a>) that you can use to load directly the gene ontology from the .obo file to a networkx graph. In the repo there is a Jupyter Notebook with instructions specific for Gene Ontology</p>",
      "rawMarkdown": "There is a Python library called obonet (https://github.com/dhimmel/obonet) that you can use to load directly the gene ontology from the .obo file to a networkx graph. In the repo there is a Jupyter Notebook with instructions specific for Gene Ontology",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 2313345,
      "author_name": "raulfd",
      "author_url": "",
      "post_date": "06/22/2023 15:49:00",
      "content": "<p>There is a Python library called obonet (<a href=\"https://github.com/dhimmel/obonet\" target=\"_blank\">https://github.com/dhimmel/obonet</a>) that you can use to load directly the gene ontology from the .obo file to a networkx graph. In the repo there is a Jupyter Notebook with instructions specific for Gene Ontology</p>",
      "votes": null,
      "replies": []
    }
  ],
  "raw_markdown_by_id": {
    "2289237": "Since the go graph is a grpah, is it possible to use a gnn on it? But how to get the graph?",
    "2313345": "There is a Python library called obonet (https://github.com/dhimmel/obonet) that you can use to load directly the gene ontology from the .obo file to a networkx graph. In the repo there is a Jupyter Notebook with instructions specific for Gene Ontology"
  },
  "source": "meta"
}