{
  "id": 415601,
  "title": "Qualifier values for CAFA test set construction",
  "url": "/competitions/cafa-5-protein-function-prediction/discussion/415601",
  "author_name": "Nicolas buton",
  "post_date": "2023-06-07T08:09:56.792000",
  "votes": 4,
  "comment_count": 0,
  "views": 0,
  "content": "<p>In GOA UniProt (version 215) GAF file available on the <a href=\"https://www.ebi.ac.uk/GOA/uniprot_release\" target=\"_blank\">EBI website</a>, the fourth column, named \"qualifier,\" contains various possible values that include:</p>\n<ul>\n<li>enables</li>\n<li>involved_in</li>\n<li>located_in</li>\n<li>part_of</li>\n<li>is_active_in</li>\n<li>acts_upstream_of_or_within</li>\n<li>contributes_to</li>\n<li>colocalizes_with</li>\n<li>acts_upstream_of</li>\n<li>acts_upstream_of_or_within_positive_effect</li>\n<li>acts_upstream_of_positive_effect</li>\n<li>acts_upstream_of_negative_effect</li>\n<li>acts_upstream_of_or_within_negative_effect</li>\n<li>NOT</li>\n</ul>\n<p>When constructing the test set for CAFA, are certain values filtered, aside from the obvious \"NOT\" qualifier?</p>",
  "messages": [
    {
      "id": 2290945,
      "postDate": "2023-06-07T08:09:56.793Z",
      "content": "<p>In GOA UniProt (version 215) GAF file available on the <a href=\"https://www.ebi.ac.uk/GOA/uniprot_release\" target=\"_blank\">EBI website</a>, the fourth column, named \"qualifier,\" contains various possible values that include:</p>\n<ul>\n<li>enables</li>\n<li>involved_in</li>\n<li>located_in</li>\n<li>part_of</li>\n<li>is_active_in</li>\n<li>acts_upstream_of_or_within</li>\n<li>contributes_to</li>\n<li>colocalizes_with</li>\n<li>acts_upstream_of</li>\n<li>acts_upstream_of_or_within_positive_effect</li>\n<li>acts_upstream_of_positive_effect</li>\n<li>acts_upstream_of_negative_effect</li>\n<li>acts_upstream_of_or_within_negative_effect</li>\n<li>NOT</li>\n</ul>\n<p>When constructing the test set for CAFA, are certain values filtered, aside from the obvious \"NOT\" qualifier?</p>",
      "rawMarkdown": "In GOA UniProt (version 215) GAF file available on the [EBI website](https://www.ebi.ac.uk/GOA/uniprot_release), the fourth column, named \"qualifier,\" contains various possible values that include:\n- enables\n- involved_in\n- located_in\n- part_of\n- is_active_in\n- acts_upstream_of_or_within\n- contributes_to\n- colocalizes_with\n- acts_upstream_of\n- acts_upstream_of_or_within_positive_effect\n- acts_upstream_of_positive_effect\n- acts_upstream_of_negative_effect\n- acts_upstream_of_or_within_negative_effect\n- NOT\n\nWhen constructing the test set for CAFA, are certain values filtered, aside from the obvious \"NOT\" qualifier?",
      "votes": 4
    }
  ],
  "comments": [],
  "raw_markdown_by_id": {
    "2290945": "In GOA UniProt (version 215) GAF file available on the [EBI website](https://www.ebi.ac.uk/GOA/uniprot_release), the fourth column, named \"qualifier,\" contains various possible values that include:\n- enables\n- involved_in\n- located_in\n- part_of\n- is_active_in\n- acts_upstream_of_or_within\n- contributes_to\n- colocalizes_with\n- acts_upstream_of\n- acts_upstream_of_or_within_positive_effect\n- acts_upstream_of_positive_effect\n- acts_upstream_of_negative_effect\n- acts_upstream_of_or_within_negative_effect\n- NOT\n\nWhen constructing the test set for CAFA, are certain values filtered, aside from the obvious \"NOT\" qualifier?"
  }
}