{
  "id": 424811,
  "title": "How annotations were added over time?",
  "url": "/competitions/cafa-5-protein-function-prediction/discussion/424811",
  "author_name": "",
  "post_date": "2023-07-15T23:14:43.092000",
  "votes": 2,
  "comment_count": 0,
  "views": 0,
  "content": "<p>Who sees something useful for a protein P38666 in a file in Attachments \"P36220.txt\" <br>\nthat contains <strong>annotations</strong> and <strong>annotation date</strong>? </p>\n<p>I plan to take a protein, the date of annotation and GO:</p>\n<p>Example:<br>\nAC <strong>P38666</strong>; Q33DV0; Q56Z81; Q9LF90;<br>\nDT <strong>18-SEP-2019,</strong> entry version 133.\"<br>\nGO; <strong>GO:0003723</strong>; F:RNA binding; IBA:GO_Central.</p>\n<p>My plans:</p>\n<ol>\n<li><p>I plan split <strong>Swiss-Prot</strong> 569 793<br>\n    to train and validation not by protein, but <strong>by annotation date</strong>.<br>\n     Everything before the date is train, later than the date is validation.<br>\n     I plan to <br>\n     Train                    on 569 793. <br>\n     Validate              on 569 793. <br>\n     Submit                     569 793. </p>\n<ol>\n<li><p>Select AnnotationScoring field<br>\nget protein from Unreviewed (TrEMBL) (248,272,897)<br>\nwhere AnnotationScoring=5</p>\n<p>{<br>\n  \"results\": [<br>\n    {<br>\n      \"entryType\": \"UniProtKB unreviewed (TrEMBL)\",<br>\n      \"primaryAccession\": \"A0A024QZA8\",<br>\n      \"uniProtkbId\": \"A0A024QZA8_HUMAN\",<br>\n      \"entryAudit\": {<br>\n        \"firstPublicDate\": \"2014-07-09\",<br>\n        \"lastAnnotationUpdateDate\": \"2023-06-28\",<br>\n        \"lastSequenceUpdateDate\": \"2014-07-09\",<br>\n        \"entryVersion\": 64,<br>\n        \"sequenceVersion\": 1<br>\n      },<br>\n     ** \"annotationScore\": 5**</p></li></ol></li>\n</ol>\n<p><a href=\"https://www.kaggle.com/liudacheldieva/p38666-date-of-annotation\" target=\"_blank\">https://www.kaggle.com/liudacheldieva/p38666-date-of-annotation</a></p>",
  "messages": [
    {
      "id": 2346012,
      "postDate": "2023-07-15T23:14:43.093Z",
      "content": "<p>Who sees something useful for a protein P38666 in a file in Attachments \"P36220.txt\" <br>\nthat contains <strong>annotations</strong> and <strong>annotation date</strong>? </p>\n<p>I plan to take a protein, the date of annotation and GO:</p>\n<p>Example:<br>\nAC <strong>P38666</strong>; Q33DV0; Q56Z81; Q9LF90;<br>\nDT <strong>18-SEP-2019,</strong> entry version 133.\"<br>\nGO; <strong>GO:0003723</strong>; F:RNA binding; IBA:GO_Central.</p>\n<p>My plans:</p>\n<ol>\n<li><p>I plan split <strong>Swiss-Prot</strong> 569 793<br>\n    to train and validation not by protein, but <strong>by annotation date</strong>.<br>\n     Everything before the date is train, later than the date is validation.<br>\n     I plan to <br>\n     Train                    on 569 793. <br>\n     Validate              on 569 793. <br>\n     Submit                     569 793. </p>\n<ol>\n<li><p>Select AnnotationScoring field<br>\nget protein from Unreviewed (TrEMBL) (248,272,897)<br>\nwhere AnnotationScoring=5</p>\n<p>{<br>\n  \"results\": [<br>\n    {<br>\n      \"entryType\": \"UniProtKB unreviewed (TrEMBL)\",<br>\n      \"primaryAccession\": \"A0A024QZA8\",<br>\n      \"uniProtkbId\": \"A0A024QZA8_HUMAN\",<br>\n      \"entryAudit\": {<br>\n        \"firstPublicDate\": \"2014-07-09\",<br>\n        \"lastAnnotationUpdateDate\": \"2023-06-28\",<br>\n        \"lastSequenceUpdateDate\": \"2014-07-09\",<br>\n        \"entryVersion\": 64,<br>\n        \"sequenceVersion\": 1<br>\n      },<br>\n     ** \"annotationScore\": 5**</p></li></ol></li>\n</ol>\n<p><a href=\"https://www.kaggle.com/liudacheldieva/p38666-date-of-annotation\" target=\"_blank\">https://www.kaggle.com/liudacheldieva/p38666-date-of-annotation</a></p>",
      "rawMarkdown": "Who sees something useful for a protein P38666 in a file in Attachments \"P36220.txt\" \nthat contains **annotations** and **annotation date**? \n\nI plan to take a protein, the date of annotation and GO:\n \nExample:\nAC **P38666**; Q33DV0; Q56Z81; Q9LF90;\nDT **18-SEP-2019,** entry version 133.\"\nGO; **GO:0003723**; F:RNA binding; IBA:GO_Central.\n\n\nMy plans:\n  1. I plan split **Swiss-Prot** 569 793\n        to train and validation not by protein, but **by annotation date**.\n         Everything before the date is train, later than the date is validation.\n         I plan to \n         Train                    on 569 793. \n         Validate              on 569 793. \n         Submit                     569 793. \n   2. Select AnnotationScoring field\n       get protein from Unreviewed (TrEMBL) (248,272,897)\n        where AnnotationScoring=5\n\n        {\n          \"results\": [\n            {\n              \"entryType\": \"UniProtKB unreviewed (TrEMBL)\",\n              \"primaryAccession\": \"A0A024QZA8\",\n              \"uniProtkbId\": \"A0A024QZA8_HUMAN\",\n              \"entryAudit\": {\n                \"firstPublicDate\": \"2014-07-09\",\n                \"lastAnnotationUpdateDate\": \"2023-06-28\",\n                \"lastSequenceUpdateDate\": \"2014-07-09\",\n                \"entryVersion\": 64,\n                \"sequenceVersion\": 1\n              },\n             ** \"annotationScore\": 5**\n\nhttps://www.kaggle.com/liudacheldieva/p38666-date-of-annotation",
      "votes": 2
    }
  ],
  "comments": [],
  "raw_markdown_by_id": {
    "2346012": "Who sees something useful for a protein P38666 in a file in Attachments \"P36220.txt\" \nthat contains **annotations** and **annotation date**? \n\nI plan to take a protein, the date of annotation and GO:\n \nExample:\nAC **P38666**; Q33DV0; Q56Z81; Q9LF90;\nDT **18-SEP-2019,** entry version 133.\"\nGO; **GO:0003723**; F:RNA binding; IBA:GO_Central.\n\n\nMy plans:\n  1. I plan split **Swiss-Prot** 569 793\n        to train and validation not by protein, but **by annotation date**.\n         Everything before the date is train, later than the date is validation.\n         I plan to \n         Train                    on 569 793. \n         Validate              on 569 793. \n         Submit                     569 793. \n   2. Select AnnotationScoring field\n       get protein from Unreviewed (TrEMBL) (248,272,897)\n        where AnnotationScoring=5\n\n        {\n          \"results\": [\n            {\n              \"entryType\": \"UniProtKB unreviewed (TrEMBL)\",\n              \"primaryAccession\": \"A0A024QZA8\",\n              \"uniProtkbId\": \"A0A024QZA8_HUMAN\",\n              \"entryAudit\": {\n                \"firstPublicDate\": \"2014-07-09\",\n                \"lastAnnotationUpdateDate\": \"2023-06-28\",\n                \"lastSequenceUpdateDate\": \"2014-07-09\",\n                \"entryVersion\": 64,\n                \"sequenceVersion\": 1\n              },\n             ** \"annotationScore\": 5**\n\nhttps://www.kaggle.com/liudacheldieva/p38666-date-of-annotation"
  }
}