Are there any other protein function prediction competitions?
", "messages": [ { "id": 2394106, "postDate": "2023-08-16T17:54:54.093Z", "content": "Are there any other protein function prediction competitions?
", "rawMarkdown": "Are there any other protein function prediction competitions?", "votes": 2 }, { "id": 2394576, "postDate": "2023-08-17T03:09:51.667Z", "rawMarkdown": "", "votes": 1, "isDeleted": true, "replies": [ { "id": 2395335, "postDate": "2023-08-17T13:11:28.907Z", "content": "Thank you very much!
\nSo basically this was THE protein function prediction competition, right?
CAFA is generally recognized as the \"main event\" of computational protein function prediction. This is the first time it was held on Kaggle, but it was held 4 times before (hence \"CAFA 5\"). The paper @nihilisticneuralnet referenced reports on the CAFA3 results. You can find publications from other CAFA rounds here: https://biofunctionprediction.org/publications/
\nWhile thermostability of enzyme variants is an important problem, but it is a highly specific aspect of function. In the novozymes challenge, the question is: \"given an enzyme, at what temperature does it stop working?\" Whereas in CAFA it is: \"Given a protein sequence, what does it do? (which GO terms are associated with it?)\"
\nOther biomedical competitions were held under the framework of the DREAM challenges. https://dreamchallenges.org/
\nOne ongoing challenge that is interesting is associating genes and mutations with phenotypes, typically diseases, that is the CAGI challenge: https://genomeinterpretation.org/
", "rawMarkdown": "CAFA is generally recognized as the \"main event\" of computational protein function prediction. This is the first time it was held on Kaggle, but it was held 4 times before (hence \"CAFA 5\"). The paper @nihilisticneuralnet referenced reports on the CAFA3 results. You can find publications from other CAFA rounds here: https://biofunctionprediction.org/publications/\n\nWhile thermostability of enzyme variants is an important problem, but it is a highly specific aspect of function. In the novozymes challenge, the question is: \"given an enzyme, at what temperature does it stop working?\" Whereas in CAFA it is: \"Given a protein sequence, what does it do? (which GO terms are associated with it?)\"\n\nOther biomedical competitions were held under the framework of the DREAM challenges. https://dreamchallenges.org/\n\nOne ongoing challenge that is interesting is associating genes and mutations with phenotypes, typically diseases, that is the CAGI challenge: https://genomeinterpretation.org/\n", "votes": 4 }, { "id": 2396212, "postDate": "2023-08-18T06:09:03.550Z", "content": "Thank you!
", "rawMarkdown": "Thank you!" } ] } ] } ], "comments": [ { "id": 2394576, "author_name": "", "author_url": "", "post_date": "2023-08-17T03:09:51.667000", "content": "", "votes": 1, "replies": [ { "id": 2395335, "author_name": "Gyula Maloveczky4", "author_url": "", "post_date": "2023-08-17T13:11:28.907000", "content": "Thank you very much!
\nSo basically this was THE protein function prediction competition, right?
CAFA is generally recognized as the \"main event\" of computational protein function prediction. This is the first time it was held on Kaggle, but it was held 4 times before (hence \"CAFA 5\"). The paper @nihilisticneuralnet referenced reports on the CAFA3 results. You can find publications from other CAFA rounds here: https://biofunctionprediction.org/publications/
\nWhile thermostability of enzyme variants is an important problem, but it is a highly specific aspect of function. In the novozymes challenge, the question is: \"given an enzyme, at what temperature does it stop working?\" Whereas in CAFA it is: \"Given a protein sequence, what does it do? (which GO terms are associated with it?)\"
\nOther biomedical competitions were held under the framework of the DREAM challenges. https://dreamchallenges.org/
\nOne ongoing challenge that is interesting is associating genes and mutations with phenotypes, typically diseases, that is the CAGI challenge: https://genomeinterpretation.org/
", "votes": 4, "replies": [] }, { "id": 2396212, "author_name": "Gyula Maloveczky4", "author_url": "", "post_date": "2023-08-18T06:09:03.550000", "content": "Thank you!
", "votes": 0, "replies": [] } ] } ] } ], "raw_markdown_by_id": { "2394106": "Are there any other protein function prediction competitions?", "2394576": "" } }