{
  "total": 272,
  "topics": [
    {
      "id": 695964,
      "title": "CAFA5 manuscript on biorxiv",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 613154,
      "title": "CAFA 6 is now live",
      "comment_count": 5,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 422615,
      "title": "Leaderboard Rescore - COMPLETE",
      "comment_count": 5,
      "views": 0,
      "votes": 17,
      "reused": true
    },
    {
      "id": 594108,
      "title": "CAFA 5 manuscript",
      "comment_count": 0,
      "views": 0,
      "votes": 4
    },
    {
      "id": 491341,
      "title": "Intelligent Systems in Molecular Biology 2024",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 462836,
      "title": "Recap of Competition - Congratulations to the Winners!",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 435531,
      "title": "CAFA 5: Thank you! What's next?",
      "comment_count": 4,
      "views": 0,
      "votes": 14,
      "reused": true
    },
    {
      "id": 402629,
      "title": "Looking for a Team Megathread",
      "comment_count": 104,
      "views": 0,
      "votes": 11,
      "reused": true
    },
    {
      "id": 403203,
      "title": "New to protein function prediction and want to catch up quickly?",
      "comment_count": 20,
      "views": 0,
      "votes": 81,
      "reused": true
    },
    {
      "id": 401532,
      "title": "Welcome to the CAFA Challenge",
      "comment_count": 17,
      "views": 0,
      "votes": 31,
      "reused": true
    },
    {
      "id": 405237,
      "title": "Information Accretion explainer ",
      "comment_count": 18,
      "views": 0,
      "votes": 68,
      "reused": true
    },
    {
      "id": 429940,
      "title": "There will be no Discord Channel for this Competition",
      "comment_count": 0,
      "views": 0,
      "votes": 6
    },
    {
      "id": 402559,
      "title": "New to Kaggle or Machine Learning? Check this out ~",
      "comment_count": 6,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 417561,
      "title": "SPROF-GO predictions",
      "comment_count": 5,
      "views": 0,
      "votes": 19,
      "reused": true
    },
    {
      "id": 434333,
      "title": "A brief overview of 13th-place LB solution",
      "comment_count": 3,
      "views": 0,
      "votes": 30,
      "reused": true
    },
    {
      "id": 464437,
      "title": "3rd Place Solution for the CAFA 5 Protein Function Prediction",
      "comment_count": 9,
      "views": 0,
      "votes": 31,
      "reused": true
    },
    {
      "id": 462419,
      "title": "Share: ESM2 large (dim 5120) and ankh embeddings",
      "comment_count": 6,
      "views": 0,
      "votes": 8,
      "reused": true
    },
    {
      "id": 433732,
      "title": "First Kaggle competition : 10th place public leaderboard; Nth place private leaderboard",
      "comment_count": 17,
      "views": 0,
      "votes": 25,
      "reused": true
    },
    {
      "id": 402804,
      "title": "Main relations in the Gene Ontology(GO)",
      "comment_count": 4,
      "views": 0,
      "votes": 13,
      "reused": true
    },
    {
      "id": 552065,
      "title": "Preprint Top2 solution ",
      "comment_count": 0,
      "views": 0,
      "votes": 9
    },
    {
      "id": 509921,
      "title": "Video available . Webinar on DeepGO 2024 June 6 17.30 CET",
      "comment_count": 1,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 491172,
      "title": "Pre-print of 4th place solution",
      "comment_count": 1,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 476222,
      "title": "Same scores on public and private leaderboard",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 466917,
      "title": "1st Place Solution for the CAFA5",
      "comment_count": 7,
      "views": 0,
      "votes": 34,
      "reused": true
    },
    {
      "id": 466971,
      "title": "6th Place Solution for the CAFA 5 Protein Function Prediction Challenge",
      "comment_count": 0,
      "views": 0,
      "votes": 8
    },
    {
      "id": 466703,
      "title": "Share: T5 embeddings for 500K+ proteins from the uniprot 2023-02 (reviewed only)",
      "comment_count": 0,
      "views": 0,
      "votes": 2
    },
    {
      "id": 463009,
      "title": "5th Place Solution for the CAFA 5 Protein Function Prediction Challenge",
      "comment_count": 0,
      "views": 0,
      "votes": 21
    },
    {
      "id": 462670,
      "title": "1st update vs Final update stat",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 462605,
      "title": "9th place solution summary",
      "comment_count": 1,
      "views": 0,
      "votes": 16,
      "reused": true
    },
    {
      "id": 462628,
      "title": "Public vs Private",
      "comment_count": 4,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 462586,
      "title": "As a highway to improvement 🤙",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 462576,
      "title": "Competition has been finalized",
      "comment_count": 5,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 462582,
      "title": "Congratulations to the winners!",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 462410,
      "title": "Final LB Update Underway - COMPLETE",
      "comment_count": 1,
      "views": 0,
      "votes": 22,
      "reused": true
    },
    {
      "id": 461557,
      "title": "The second update is also the final result?",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 458311,
      "title": "2nd leaderboard update?",
      "comment_count": 4,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 452639,
      "title": "Fixing LB Update - COMPLETED!",
      "comment_count": 3,
      "views": 0,
      "votes": 12,
      "reused": true
    },
    {
      "id": 454084,
      "title": "Memes time",
      "comment_count": 0,
      "views": 0,
      "votes": -2
    },
    {
      "id": 452325,
      "title": "Leaderboard Updated - COMPLETE",
      "comment_count": 7,
      "views": 0,
      "votes": 18,
      "reused": true
    },
    {
      "id": 452628,
      "title": "[UPDATED] Current LB status",
      "comment_count": 10,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 452418,
      "title": "LB After First Update Stats and shake-ups 🌟 💥 Fixing [UPDATED]",
      "comment_count": 14,
      "views": 0,
      "votes": 11,
      "reused": true
    },
    {
      "id": 452377,
      "title": "LB updated! Share your score if it changes!",
      "comment_count": 4,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 445580,
      "title": "One month passed waiting for interim LB updates",
      "comment_count": 5,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 445792,
      "title": "How to download the \"CAFA 5 Protein Function Prediction\" competition data?",
      "comment_count": 3,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 418528,
      "title": "What's your valid_acc v.s f1_score",
      "comment_count": 1,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 438367,
      "title": "Would be possible to allow to make late submissions and make notebooks public , please ? ",
      "comment_count": 0,
      "views": 0,
      "votes": 6
    },
    {
      "id": 436014,
      "title": "Accessing data past registration deadline",
      "comment_count": 2,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 422288,
      "title": "Deep Go Paper Analysis | 💪🚀💪📈",
      "comment_count": 2,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 433900,
      "title": "Embeddings for targets, embeddings for inputs (DeepGoZero-based solution)",
      "comment_count": 3,
      "views": 0,
      "votes": 13,
      "reused": true
    },
    {
      "id": 434064,
      "title": "Private 2nd/Public 5th solution: Py-Boost and GCN",
      "comment_count": 7,
      "views": 0,
      "votes": 59,
      "reused": true
    },
    {
      "id": 433777,
      "title": "Let’s Meet In The Latent Space - Joint Embedding of Protein Sequences and GO Terms",
      "comment_count": 14,
      "views": 0,
      "votes": 21,
      "reused": true
    },
    {
      "id": 435042,
      "title": "[0.58 No QuickGO] A brief overview of my solution in CAFA5 Kaggle competition",
      "comment_count": 0,
      "views": 0,
      "votes": 19
    },
    {
      "id": 434923,
      "title": "Access to Test Data Predictions",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 415980,
      "title": "ESM2 fine-tuning baseline (LB=0.383)",
      "comment_count": 2,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 433603,
      "title": "Public 9th/Private 331st Place Solution - A Non-Bioinformatician's Journey in CAFA",
      "comment_count": 18,
      "views": 0,
      "votes": 29,
      "reused": true
    },
    {
      "id": 434656,
      "title": "Sophisticated Data Preprocessing for the CAFA5 Dataset",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 433802,
      "title": "An eyeball test shows that homology methods work reasonably well - pun intended",
      "comment_count": 2,
      "views": 0,
      "votes": 11,
      "reused": true
    },
    {
      "id": 433865,
      "title": "Please share your LB and CV on each of the three types of gene ontologies",
      "comment_count": 5,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 433962,
      "title": "Did Anyone Successfully Employ LTR in this Competition?",
      "comment_count": 7,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 434186,
      "title": "When will I be able to share my data?",
      "comment_count": 2,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 434134,
      "title": "How Do You Manage Your Analytical Environment in Kaggle Competitions?",
      "comment_count": 1,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 433669,
      "title": "Top scores using only sequence information  ? ",
      "comment_count": 23,
      "views": 0,
      "votes": 20,
      "reused": true
    },
    {
      "id": 433779,
      "title": "How many subontologies to use for training?",
      "comment_count": 13,
      "views": 0,
      "votes": 9,
      "reused": true
    },
    {
      "id": 433543,
      "title": "Please share top public LB solutions 🙏",
      "comment_count": 2,
      "views": 0,
      "votes": 15,
      "reused": true
    },
    {
      "id": 433868,
      "title": " I mistakenly predicted too many GO terms, with each protein reaching up to 4k -3w, and forgot to extract the best 1500. ",
      "comment_count": 4,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 433921,
      "title": "T5 residual embeds for further experiments",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 433445,
      "title": "Are language models working together?",
      "comment_count": 19,
      "views": 0,
      "votes": 15,
      "reused": true
    },
    {
      "id": 433184,
      "title": "CAFA5: last day competition stats",
      "comment_count": 20,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 433832,
      "title": "So much same scores on the leaderboard, juts coincidence?",
      "comment_count": 6,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 433547,
      "title": "[Silver Medal] Shooting for Gold: ESM-15B in JAX, GNNs, and What Didn't Work",
      "comment_count": 11,
      "views": 0,
      "votes": 9,
      "reused": true
    },
    {
      "id": 433472,
      "title": "Yeah, so there's no way I am going to finish on time...😔 (3D Protein Structure Approach)",
      "comment_count": 17,
      "views": 0,
      "votes": 15,
      "reused": true
    },
    {
      "id": 433493,
      "title": "Will late submissions be allowed later?",
      "comment_count": 4,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 433805,
      "title": "MultilabelStratifiedKFold[DEMO]",
      "comment_count": 1,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 433761,
      "title": "Please share your methods to construct validation sets 🤗",
      "comment_count": 3,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 433091,
      "title": "Ensembling of public test set submissions ?",
      "comment_count": 7,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 433598,
      "title": "Rules Acceptance Deadline",
      "comment_count": 5,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 433494,
      "title": "Why was the closing date delayed by four months",
      "comment_count": 4,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 433604,
      "title": "Release public test set",
      "comment_count": 1,
      "views": 0,
      "votes": 9,
      "reused": true
    },
    {
      "id": 433537,
      "title": "When will leaderbord updates?",
      "comment_count": 1,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 433515,
      "title": "why has the deadline been extended? ",
      "comment_count": 2,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 433555,
      "title": "Protein embeddings clustering and prediction",
      "comment_count": 0,
      "views": 0,
      "votes": 6
    },
    {
      "id": 433412,
      "title": "Clarification on Final validation",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 402565,
      "title": "Protein Language Models",
      "comment_count": 7,
      "views": 0,
      "votes": 41,
      "reused": true
    },
    {
      "id": 433293,
      "title": "There is no private test data?",
      "comment_count": 2,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 433351,
      "title": "Is this competition will be shake ?? ",
      "comment_count": 1,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 433329,
      "title": "Selection submission candidates",
      "comment_count": 4,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 433313,
      "title": "funny competition",
      "comment_count": 2,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 433266,
      "title": "Shakeup is coming...",
      "comment_count": 2,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 432529,
      "title": "Proteins in the test superset already have annotations in the 3 subontologies",
      "comment_count": 6,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 432944,
      "title": "Let's share some memes!",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 433001,
      "title": "How to train model on two dataset and then merge the model together?",
      "comment_count": 1,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 402648,
      "title": "ProteinBert - Protein Function language Model",
      "comment_count": 15,
      "views": 0,
      "votes": 45,
      "reused": true
    },
    {
      "id": 432907,
      "title": "Public Score/Local Score/GE0.4 per prot",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 418295,
      "title": "Video available.  Friday 18.10 John Mitchell - survey of the related Kaggle competition .  Webinars and educational/research activity around the competition ",
      "comment_count": 27,
      "views": 0,
      "votes": 31,
      "reused": true
    },
    {
      "id": 431181,
      "title": "Will there will be tremendous shakeup???",
      "comment_count": 3,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 431491,
      "title": "3 remarkable ideas from Zoltan's notebook \"CombineEmbeddings\"",
      "comment_count": 2,
      "views": 0,
      "votes": 16,
      "reused": true
    },
    {
      "id": 432272,
      "title": "Similar competitions ",
      "comment_count": 5,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 432459,
      "title": "Question about IA.txt",
      "comment_count": 2,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 432261,
      "title": "Public LB Visualization (as of 16/08/2023)",
      "comment_count": 3,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 432421,
      "title": "duplicate sequences in fasta",
      "comment_count": 2,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 431652,
      "title": "Puzzling leaderboard score behaviour",
      "comment_count": 16,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 431832,
      "title": "System is crashing even after turning GPU",
      "comment_count": 2,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 431688,
      "title": "Are the submissions with merged submissions not viable?",
      "comment_count": 4,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 431209,
      "title": "When Is the Right Time to Post Our Solution?",
      "comment_count": 6,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 430218,
      "title": "How does zeroing out probability values change the result?",
      "comment_count": 2,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 431362,
      "title": "UniProt Dataset",
      "comment_count": 1,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 431384,
      "title": "Species Description",
      "comment_count": 2,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 430445,
      "title": "Error in submission ",
      "comment_count": 4,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 431102,
      "title": "Why the Ensemble of pre-predicted TSV files at the end?",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 431027,
      "title": "Notebook Threw Exception Error",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 430275,
      "title": "Large Gap between CV and LB",
      "comment_count": 2,
      "views": 0,
      "votes": 8,
      "reused": true
    },
    {
      "id": 430523,
      "title": "Submission Plan",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 403200,
      "title": "test-train duplicates",
      "comment_count": 22,
      "views": 0,
      "votes": 16,
      "reused": true
    },
    {
      "id": 430376,
      "title": "Order of terms in `train_terms.tsv`.",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 430166,
      "title": "sequence compare between  Q8YF53 and C0RGW8 ",
      "comment_count": 1,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 429461,
      "title": "An error occurred while committing kernel:",
      "comment_count": 2,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 429698,
      "title": "Timestamping GO annotations",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 426999,
      "title": "Ensemble decides the score?",
      "comment_count": 5,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 429218,
      "title": "Inconsistent Protein Sequences for the Same Protein",
      "comment_count": 5,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 409329,
      "title": "CV Grouping Strategy",
      "comment_count": 10,
      "views": 0,
      "votes": 11,
      "reused": true
    },
    {
      "id": 428068,
      "title": "Overlap between Train and Test Set",
      "comment_count": 3,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 426878,
      "title": "Kaggle notebook or personal computer notebook? ",
      "comment_count": 6,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 427002,
      "title": "Question about the high-scored public notebooks",
      "comment_count": 6,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 425031,
      "title": "External Data",
      "comment_count": 1,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 402802,
      "title": "CAFA 5 some relevant research papers",
      "comment_count": 3,
      "views": 0,
      "votes": 29,
      "reused": true
    },
    {
      "id": 426157,
      "title": "Stuck with the data given.",
      "comment_count": 6,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 427046,
      "title": "why I use a quick saving trick fail",
      "comment_count": 5,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 426592,
      "title": "How to add pre-trained model?",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 426507,
      "title": "Ground truth labels",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 419127,
      "title": "The metric is calculated with: prop_mode='fill' or prop_mode='max' ?",
      "comment_count": 4,
      "views": 0,
      "votes": 12,
      "reused": true
    },
    {
      "id": 426251,
      "title": "Is it best to use external datasets of predictions for generalized pretrained models such as DeepGOZero?",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 425919,
      "title": "Question on 'submission.tsv'",
      "comment_count": 2,
      "views": 0,
      "votes": -1,
      "reused": true
    },
    {
      "id": 421887,
      "title": "Still Confused about Final Test Set",
      "comment_count": 4,
      "views": 0,
      "votes": 15,
      "reused": true
    },
    {
      "id": 425917,
      "title": "Notebook Does not display input/output folder files",
      "comment_count": 0,
      "views": 0,
      "votes": -1
    },
    {
      "id": 425389,
      "title": "If all proteins in the private test set are novel?",
      "comment_count": 4,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 425677,
      "title": "Notebook memory use",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 406168,
      "title": "ESM2 final-layer embeddings",
      "comment_count": 5,
      "views": 0,
      "votes": 47,
      "reused": true
    },
    {
      "id": 423880,
      "title": "DeepGOZero: Improving protein function prediction from sequence and zero-shot learning based on ontology axioms",
      "comment_count": 9,
      "views": 0,
      "votes": 12,
      "reused": true
    },
    {
      "id": 424726,
      "title": "Why protein's terms are different with UniProtKB",
      "comment_count": 7,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 424899,
      "title": "Version of go-basic.obo for LB and final evaluation",
      "comment_count": 3,
      "views": 0,
      "votes": 12,
      "reused": true
    },
    {
      "id": 420871,
      "title": "Submission scoring probelm",
      "comment_count": 1,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 425025,
      "title": "New to Competition 🤗",
      "comment_count": 2,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 425048,
      "title": "0.55746  LB score?",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 424996,
      "title": "Maybe a Small Bug in Metric Derivation?",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 424819,
      "title": "How was the best publicly available solution created?",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 424811,
      "title": "How annotations were added over time?",
      "comment_count": 0,
      "views": 0,
      "votes": 2
    },
    {
      "id": 424498,
      "title": "output file order",
      "comment_count": 2,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 424134,
      "title": "Is it possible to add more proteins to public LB scoring ? ",
      "comment_count": 5,
      "views": 0,
      "votes": 24,
      "reused": true
    },
    {
      "id": 424225,
      "title": "Which Machine Learning Algoritham would I use on protein data? Please Answer",
      "comment_count": 1,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 413420,
      "title": "Is protein data linearly separable? Why are convolutional neural networks worse than linear neural networks?",
      "comment_count": 9,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 405362,
      "title": "quick-go annotations",
      "comment_count": 26,
      "views": 0,
      "votes": 23,
      "reused": true
    },
    {
      "id": 424116,
      "title": "Mol-Instructions",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 419597,
      "title": "Potential missing terms in go-basic.obo file",
      "comment_count": 4,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 423658,
      "title": "Which databases will be used for evaluation?",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 422459,
      "title": "One Month Left! - A summary of everything that happened",
      "comment_count": 0,
      "views": 0,
      "votes": 49
    },
    {
      "id": 421189,
      "title": "Lots of sequences with 100% similarity",
      "comment_count": 12,
      "views": 0,
      "votes": 11,
      "reused": true
    },
    {
      "id": 421170,
      "title": "Video  with comments by top1: Robert Hoehndorf, organizer: Predrag Radivojac,  etc ",
      "comment_count": 2,
      "views": 0,
      "votes": 18,
      "reused": true
    },
    {
      "id": 422147,
      "title": "Story Behind CAFA 5 Protein Function Prediction",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 421977,
      "title": "Decoding the embeddings",
      "comment_count": 2,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 421836,
      "title": "About the LLM embeddings",
      "comment_count": 1,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 421799,
      "title": "Embeddings for Graph CNN",
      "comment_count": 0,
      "views": 0,
      "votes": 2
    },
    {
      "id": 419545,
      "title": "Question about the fill mode Propagation",
      "comment_count": 1,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 420241,
      "title": "(Probably) Error in the metric computation",
      "comment_count": 7,
      "views": 0,
      "votes": 28,
      "reused": true
    },
    {
      "id": 421639,
      "title": "Trouble with 'goatools' install",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 421304,
      "title": "Punishment for predicting true terms that are not experimentally validated?",
      "comment_count": 2,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 420931,
      "title": "Everything you need to know | CAFA Protein Prediction",
      "comment_count": 3,
      "views": 0,
      "votes": 8,
      "reused": true
    },
    {
      "id": 421512,
      "title": "TEMPROT Paper Analysis | CAFA 5 ",
      "comment_count": 0,
      "views": 0,
      "votes": 8
    },
    {
      "id": 421267,
      "title": "$ curl -s -X GET --header 'Accept:text/tsv' 'https://www.ebi.ac.uk/QuickGO/services/annotation/downloadSearch?includeFields=goName&includeFields=taxonName&includeFields=name&geneProductId=P00533&taxonId=9606'  ",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 404853,
      "title": "odd jump on the LB",
      "comment_count": 27,
      "views": 0,
      "votes": 15,
      "reused": true
    },
    {
      "id": 419802,
      "title": "0.6 and beyond - a literature review for better ideas",
      "comment_count": 7,
      "views": 0,
      "votes": 16,
      "reused": true
    },
    {
      "id": 402597,
      "title": "Bioinformatics on Kaggle. Biopython.",
      "comment_count": 12,
      "views": 0,
      "votes": 46,
      "reused": true
    },
    {
      "id": 418820,
      "title": "Protein Families",
      "comment_count": 8,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 418929,
      "title": "Validation loss, Validation Accuracy, F1 Score... How is that possible",
      "comment_count": 4,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 419413,
      "title": "Understanding the Evaluation Process ",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 418602,
      "title": "Information in the first line of each FASTA record in training_sequences.fasta",
      "comment_count": 3,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 419230,
      "title": "Naive baseline with LSTM",
      "comment_count": 0,
      "views": 0,
      "votes": 6
    },
    {
      "id": 419122,
      "title": "Looking for a team or create a new team",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 414731,
      "title": "How to translate short amino acid sequences to embeddings?",
      "comment_count": 2,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 419056,
      "title": "Finetune a LLM on 2 GPUs",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 418421,
      "title": "About Code Competitions?",
      "comment_count": 7,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 415326,
      "title": "Is there any way to apply a GNN on this data?",
      "comment_count": 1,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 402756,
      "title": "Protein Sequence Embedding Techniques (Resources)",
      "comment_count": 10,
      "views": 0,
      "votes": 16,
      "reused": true
    },
    {
      "id": 418500,
      "title": "Sporadic submission scoring error",
      "comment_count": 3,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 418494,
      "title": "Use of GO prediction software",
      "comment_count": 4,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 417784,
      "title": "Post Processing",
      "comment_count": 2,
      "views": 0,
      "votes": 13,
      "reused": true
    },
    {
      "id": 418456,
      "title": "The MFO imbalance problem",
      "comment_count": 0,
      "views": 0,
      "votes": 6
    },
    {
      "id": 418267,
      "title": "Deepmind Alphafold???",
      "comment_count": 9,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 418006,
      "title": "EDA insights",
      "comment_count": 0,
      "views": 0,
      "votes": 28
    },
    {
      "id": 402696,
      "title": "Maybe we're not actually predicting protein function? ",
      "comment_count": 14,
      "views": 0,
      "votes": 30,
      "reused": true
    },
    {
      "id": 416745,
      "title": "How was the train set selected? Swiss-Prot vs TrEMBL and curated annotations. ",
      "comment_count": 1,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 417696,
      "title": "Training data augmentation",
      "comment_count": 1,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 417504,
      "title": "Will submission protein change?",
      "comment_count": 1,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 417248,
      "title": "Competition Evaluation Metric. How is it calculated with respect to threshold value?",
      "comment_count": 2,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 416956,
      "title": "Taxonomy data useful?",
      "comment_count": 1,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 416955,
      "title": "Doubts regarding the scoring/evaluation criteria",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 403040,
      "title": "Info on CAFA4",
      "comment_count": 4,
      "views": 0,
      "votes": 12,
      "reused": true
    },
    {
      "id": 416682,
      "title": "System Account CompetitionsSubmitValidator is not registered.",
      "comment_count": 6,
      "views": 0,
      "votes": 9,
      "reused": true
    },
    {
      "id": 416506,
      "title": "Looking for a teammate or 2, to discuss project progress with and accountability ()",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 415889,
      "title": "After the competition, the CAFA-5 data would be publicly available?",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 414985,
      "title": "Extracting Useful Features from Protein Descriptions for Training?",
      "comment_count": 2,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 412726,
      "title": "How much to learn about Protein Functions?",
      "comment_count": 4,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 415596,
      "title": "The limits of sequence derived embeddings",
      "comment_count": 6,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 415601,
      "title": "Qualifier values for CAFA test set construction",
      "comment_count": 0,
      "views": 0,
      "votes": 4
    },
    {
      "id": 415111,
      "title": "About the probabilities",
      "comment_count": 7,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 415014,
      "title": "Same examples in testing and training sets",
      "comment_count": 1,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 413361,
      "title": "Can I submit a Jupyter notebook or Python script via the Kaggle API?",
      "comment_count": 2,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 413976,
      "title": "Need help with embeddings.",
      "comment_count": 2,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 414486,
      "title": "missing terms in Train/train_terms.tsv",
      "comment_count": 2,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 413334,
      "title": "Out of memory for GPUs???",
      "comment_count": 14,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 413918,
      "title": "How did train_terms.tsv created?",
      "comment_count": 4,
      "views": 0,
      "votes": 8,
      "reused": true
    },
    {
      "id": 408153,
      "title": "Difference between the train_terms.tsv and GAF from geneontology.org",
      "comment_count": 4,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 413212,
      "title": "What are numbers in t5embeds/train_embeds.npy ?",
      "comment_count": 1,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 413594,
      "title": "How to preprocess data from beginning?",
      "comment_count": 2,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 413349,
      "title": "GO Term count analysis for helping class sampling",
      "comment_count": 1,
      "views": 0,
      "votes": 13,
      "reused": true
    },
    {
      "id": 412853,
      "title": "Leaderboard public score calculation",
      "comment_count": 2,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 403495,
      "title": "Top Papers on Automated Function Prediction (AFP)",
      "comment_count": 5,
      "views": 0,
      "votes": 23,
      "reused": true
    },
    {
      "id": 412462,
      "title": "PyTorch training is not working",
      "comment_count": 5,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 411919,
      "title": "Memory Allocation Error",
      "comment_count": 4,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 411201,
      "title": "Running the evaluator",
      "comment_count": 2,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 411409,
      "title": "The spatial structure of amino acids",
      "comment_count": 6,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 411300,
      "title": "Ideas for a good CV setting anyone?",
      "comment_count": 2,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 412072,
      "title": "API code snipet for Meta ESMFold",
      "comment_count": 0,
      "views": 0,
      "votes": 6
    },
    {
      "id": 411789,
      "title": "Introduction to Protein Sequences(Synthesis and Prediction) using BioPython",
      "comment_count": 0,
      "views": 0,
      "votes": 7
    },
    {
      "id": 411777,
      "title": "CAFA Related Papers",
      "comment_count": 1,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 407730,
      "title": "biological background",
      "comment_count": 1,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 409962,
      "title": "'U' in the protein sequencies",
      "comment_count": 6,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 406914,
      "title": "At the final evaluation - annotations can only be ADDED  while existing (high-confident)  will be the same, or some can also \"disappear\"(not-confirmed) ?",
      "comment_count": 2,
      "views": 0,
      "votes": 13,
      "reused": true
    },
    {
      "id": 409498,
      "title": "Feature Construction For Machine Learning Models",
      "comment_count": 3,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 409952,
      "title": "How to Select the Best Protein Embedding Features in T5 and Other Feature Extraction Transformers?",
      "comment_count": 2,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 409802,
      "title": "Data Augmentation Techniques",
      "comment_count": 5,
      "views": 0,
      "votes": 9,
      "reused": true
    },
    {
      "id": 409845,
      "title": "unique go id in train and test set",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 407470,
      "title": "One question about weighted precision",
      "comment_count": 6,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 409772,
      "title": "Beginners understanding of GO graph",
      "comment_count": 0,
      "views": 0,
      "votes": 6
    },
    {
      "id": 405547,
      "title": "Similar Competition Winner Solutions  🏆",
      "comment_count": 2,
      "views": 0,
      "votes": 15,
      "reused": true
    },
    {
      "id": 409206,
      "title": "how to use venv in Kaggle",
      "comment_count": 0,
      "views": 0,
      "votes": 4
    },
    {
      "id": 405552,
      "title": "Sharing some of my learning experiences for beginners.",
      "comment_count": 3,
      "views": 0,
      "votes": 16,
      "reused": true
    },
    {
      "id": 406658,
      "title": "Art gallery: Protein embeddings ",
      "comment_count": 4,
      "views": 0,
      "votes": 17,
      "reused": true
    },
    {
      "id": 405898,
      "title": "What does \"published\" mean for the test superset?",
      "comment_count": 5,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 407220,
      "title": "Did you manage to get local evaluation to work?",
      "comment_count": 1,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 407162,
      "title": "ProtBERT Embeddings Dataset+Data Card 🔥",
      "comment_count": 2,
      "views": 0,
      "votes": 15,
      "reused": true
    },
    {
      "id": 407048,
      "title": "About this competition",
      "comment_count": 2,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 406573,
      "title": "How similar are train and test data?",
      "comment_count": 7,
      "views": 0,
      "votes": 13,
      "reused": true
    },
    {
      "id": 406602,
      "title": "Impact of Different Protein structures on the Protein functioning",
      "comment_count": 2,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 403258,
      "title": "Possible bug in evaluation code causing submission errors",
      "comment_count": 4,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 406336,
      "title": "2D embedding of CAFA test proteins",
      "comment_count": 11,
      "views": 0,
      "votes": 13,
      "reused": true
    },
    {
      "id": 406504,
      "title": "Validation Strategy",
      "comment_count": 1,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 405785,
      "title": "What is the difference between a 6-digit and a 10-digit EntryID (unique protein number)?",
      "comment_count": 9,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 405565,
      "title": "Why are the existing GO annotations so poor?",
      "comment_count": 5,
      "views": 0,
      "votes": 12,
      "reused": true
    },
    {
      "id": 405947,
      "title": "Small bug in test data: A0A1D6E0S8 appears twice",
      "comment_count": 0,
      "views": 0,
      "votes": 10
    },
    {
      "id": 405313,
      "title": "Notebook only submissions?",
      "comment_count": 10,
      "views": 0,
      "votes": 8,
      "reused": true
    },
    {
      "id": 405838,
      "title": "I am getting Error that NoteBook threw exception",
      "comment_count": 0,
      "views": 0,
      "votes": 4
    },
    {
      "id": 405663,
      "title": "String Database",
      "comment_count": 4,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 403053,
      "title": "Error reading taxon list.tsv",
      "comment_count": 5,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 405005,
      "title": "Are we expecting CAFA pros to join the competition?",
      "comment_count": 5,
      "views": 0,
      "votes": 9,
      "reused": true
    },
    {
      "id": 405085,
      "title": "Q: The rationale behind the choice of GO termset for the training",
      "comment_count": 2,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 403166,
      "title": "Should we predict parents?",
      "comment_count": 4,
      "views": 0,
      "votes": 8,
      "reused": true
    },
    {
      "id": 405090,
      "title": "Q: information accretion values in IA.txt",
      "comment_count": 2,
      "views": 0,
      "votes": 12,
      "reused": true
    },
    {
      "id": 404946,
      "title": "Can the Public LB test subset be hacked?",
      "comment_count": 8,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 402829,
      "title": "Predicting GO annotations beyond protein homology",
      "comment_count": 6,
      "views": 0,
      "votes": 25,
      "reused": true
    },
    {
      "id": 403320,
      "title": "Obsolete IDs",
      "comment_count": 3,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 402842,
      "title": "Levels of knowledge specificity",
      "comment_count": 1,
      "views": 0,
      "votes": 26,
      "reused": true
    },
    {
      "id": 403503,
      "title": "Pretrained embeddings for all SwissProt proteins (Dataset)",
      "comment_count": 1,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 403213,
      "title": "GO_terms_not_in_train",
      "comment_count": 9,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 403543,
      "title": "Baseline From Literature Methods",
      "comment_count": 0,
      "views": 0,
      "votes": 6
    },
    {
      "id": 403058,
      "title": "About this competition?",
      "comment_count": 6,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 402767,
      "title": "I am new need help",
      "comment_count": 7,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 402936,
      "title": "A GO Primer",
      "comment_count": 0,
      "views": 0,
      "votes": 13
    },
    {
      "id": 402838,
      "title": "PDB structure speedrun?",
      "comment_count": 2,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 402840,
      "title": "🧬 Graph Visualisation Kulyk 🧬",
      "comment_count": 2,
      "views": 0,
      "votes": 28,
      "reused": true
    },
    {
      "id": 402645,
      "title": "CAFA Researcher- looking for team",
      "comment_count": 11,
      "views": 0,
      "votes": 10,
      "reused": true
    },
    {
      "id": 402560,
      "title": "🧬 Useful Resources List 🧬",
      "comment_count": 2,
      "views": 0,
      "votes": 25,
      "reused": true
    },
    {
      "id": 402580,
      "title": "What is a FASTA File and How To Read It",
      "comment_count": 2,
      "views": 0,
      "votes": 24,
      "reused": true
    }
  ],
  "errors": []
}