{ "id": 617644, "title": "What is the BLAST-Quick-SProF-Zero-Pred dataset used for?", "url": "/competitions/cafa-6-protein-function-prediction/discussion/617644", "author_name": "", "post_date": "2025-11-11T12:32:56.545941Z", "votes": 3, "comment_count": 9, "views": 0, "content": "

Does anyone know more about this dataset BLAST-Quick-SProF-Zero-Pred ? What is it used for, and why do people use it?

", "messages": [ { "id": "3318841", "postDate": "11/11/2025 12:32:56", "content": "

Does anyone know more about this dataset BLAST-Quick-SProF-Zero-Pred ? What is it used for, and why do people use it?

", "rawMarkdown": "Does anyone know more about this dataset [BLAST-Quick-SProF-Zero-Pred](https://www.kaggle.com/datasets/siddhvr/blast-quick-sprof-zero-pred) ? What is it used for, and why do people use it?", "votes": null }, { "id": "3320834", "postDate": "11/12/2025 20:35:58", "content": "

The creator of the dataset knows for sure, simply tag them @siddhvr There are also notebooks listed at the bottom that use it, so that should give you a pretty good idea while you are waiting for a response.

", "rawMarkdown": "The creator of the dataset knows for sure, simply tag them @siddhvr There are also notebooks listed at the bottom that use it, so that should give you a pretty good idea while you are waiting for a response.", "votes": null }, { "id": "3320864", "postDate": "11/12/2025 21:27:41", "content": "

Maybe this: https://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/417561\nAnd this:\nhttps://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/417561

", "rawMarkdown": "Maybe this: https://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/417561\nAnd this:\nhttps://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/417561", "votes": null }, { "id": "3348161", "postDate": "11/25/2025 16:32:43", "content": "

Hello, sir. Did you remember what is the k you set to select the topk, And did you choose to propagate ancester GO label after prediction

", "rawMarkdown": "Hello, sir. Did you remember what is the k you set to select the topk, And did you choose to propagate ancester GO label after prediction", "votes": null }, { "id": "3360486", "postDate": "12/02/2025 08:35:10", "content": "

Hi, I kept all the defaults of the predict.py script

\n

python predict.py --gpu --fasta \"$input_file\" --outpath \"$output_folder\"

", "rawMarkdown": "Hi, I kept all the defaults of the predict.py script \n\n`python predict.py --gpu --fasta \"$input_file\" --outpath \"$output_folder\"`", "votes": null }, { "id": "3360519", "postDate": "12/02/2025 09:14:03", "content": "

got it, it scores much lower than in CAFA6, if it scores around 0.5 in CAFA5?

", "rawMarkdown": "got it, it scores much lower than in CAFA6, if it scores around 0.5 in CAFA5?", "votes": null }, { "id": "3360563", "postDate": "12/02/2025 10:20:10", "content": "

I did't try it so far, did you?

", "rawMarkdown": "I did't try it so far, did you?", "votes": null }, { "id": "3362284", "postDate": "12/04/2025 12:59:58", "content": "

I did, it scored lower, lower than 0.30, you could try it also…. I just run the prediction like you before

", "rawMarkdown": "I did, it scored lower, lower than 0.30, you could try it also.... I just run the prediction like you before", "votes": null }, { "id": "3362348", "postDate": "12/04/2025 15:01:38", "content": "

I was thinking of trying it with 150

", "rawMarkdown": "I was thinking of trying it with 150", "votes": null }, { "id": "3367661", "postDate": "12/08/2025 16:20:31", "content": "

is the 150 refers to top150 results of it.

", "rawMarkdown": "is the 150 refers to top150 results of it.", "votes": null } ], "comments": [ { "id": 3320834, "author_name": "tilii7", "author_url": "", "post_date": "11/12/2025 20:35:58", "content": "

The creator of the dataset knows for sure, simply tag them @siddhvr There are also notebooks listed at the bottom that use it, so that should give you a pretty good idea while you are waiting for a response.

", "votes": null, "replies": [] }, { "id": 3320864, "author_name": "mtinti", "author_url": "", "post_date": "11/12/2025 21:27:41", "content": "

Maybe this: https://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/417561\nAnd this:\nhttps://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/417561

", "votes": null, "replies": [ { "id": 3348161, "author_name": "aizealotwu", "author_url": "", "post_date": "11/25/2025 16:32:43", "content": "

Hello, sir. Did you remember what is the k you set to select the topk, And did you choose to propagate ancester GO label after prediction

", "votes": null, "replies": [ { "id": 3360486, "author_name": "mtinti", "author_url": "", "post_date": "12/02/2025 08:35:10", "content": "

Hi, I kept all the defaults of the predict.py script

\n

python predict.py --gpu --fasta \"$input_file\" --outpath \"$output_folder\"

", "votes": null, "replies": [ { "id": 3360519, "author_name": "aizealotwu", "author_url": "", "post_date": "12/02/2025 09:14:03", "content": "

got it, it scores much lower than in CAFA6, if it scores around 0.5 in CAFA5?

", "votes": null, "replies": [ { "id": 3360563, "author_name": "mtinti", "author_url": "", "post_date": "12/02/2025 10:20:10", "content": "

I did't try it so far, did you?

", "votes": null, "replies": [ { "id": 3362284, "author_name": "aizealotwu", "author_url": "", "post_date": "12/04/2025 12:59:58", "content": "

I did, it scored lower, lower than 0.30, you could try it also…. I just run the prediction like you before

", "votes": null, "replies": [ { "id": 3362348, "author_name": "mtinti", "author_url": "", "post_date": "12/04/2025 15:01:38", "content": "

I was thinking of trying it with 150

", "votes": null, "replies": [ { "id": 3367661, "author_name": "aizealotwu", "author_url": "", "post_date": "12/08/2025 16:20:31", "content": "

is the 150 refers to top150 results of it.

", "votes": null, "replies": [] } ] } ] } ] } ] } ] } ] } ] } ], "raw_markdown_by_id": { "3318841": "Does anyone know more about this dataset [BLAST-Quick-SProF-Zero-Pred](https://www.kaggle.com/datasets/siddhvr/blast-quick-sprof-zero-pred) ? What is it used for, and why do people use it?", "3320834": "The creator of the dataset knows for sure, simply tag them @siddhvr There are also notebooks listed at the bottom that use it, so that should give you a pretty good idea while you are waiting for a response.", "3320864": "Maybe this: https://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/417561\nAnd this:\nhttps://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/417561", "3348161": "Hello, sir. Did you remember what is the k you set to select the topk, And did you choose to propagate ancester GO label after prediction", "3360486": "Hi, I kept all the defaults of the predict.py script \n\n`python predict.py --gpu --fasta \"$input_file\" --outpath \"$output_folder\"`", "3360519": "got it, it scores much lower than in CAFA6, if it scores around 0.5 in CAFA5?", "3360563": "I did't try it so far, did you?", "3362284": "I did, it scored lower, lower than 0.30, you could try it also.... I just run the prediction like you before", "3362348": "I was thinking of trying it with 150", "3367661": "is the 150 refers to top150 results of it." }, "source": "meta" }