{
  "id": 650818,
  "title": "Embeddings Questions",
  "url": "/competitions/cafa-6-protein-function-prediction/discussion/650818",
  "author_name": "",
  "post_date": "2025-12-02T10:32:43.300149700Z",
  "votes": null,
  "comment_count": 4,
  "views": 0,
  "content": "<p>Is there a method to obtain the embeddings for all proteins in the dataset? For several PLMs for ESM or ProtT5?</p>",
  "messages": [
    {
      "id": "3360574",
      "postDate": "12/02/2025 10:32:43",
      "content": "<p>Is there a method to obtain the embeddings for all proteins in the dataset? For several PLMs for ESM or ProtT5?</p>",
      "rawMarkdown": "Is there a method to obtain the embeddings for all proteins in the dataset? For several PLMs for ESM or ProtT5?",
      "votes": null
    },
    {
      "id": "3360582",
      "postDate": "12/02/2025 10:38:46",
      "content": "<p>See here for T5:\n<a href=\"https://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/613299\" target=\"_blank\">https://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/613299</a>\nAnd here for EMS-C:\n<a href=\"https://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/648148\" target=\"_blank\">https://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/648148</a></p>",
      "rawMarkdown": "See here for T5:\nhttps://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/613299\nAnd here for EMS-C:\nhttps://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/648148",
      "votes": null
    },
    {
      "id": "3360649",
      "postDate": "12/02/2025 12:15:25",
      "content": "<p>And EMS2, I did it a while ago and forgot to share…</p>\n<p><a href=\"https://www.kaggle.com/code/mtinti/extracting-esm-2-embeddings/notebook\" target=\"_blank\">https://www.kaggle.com/code/mtinti/extracting-esm-2-embeddings/notebook</a></p>",
      "rawMarkdown": "And EMS2, I did it a while ago and forgot to share...\n\nhttps://www.kaggle.com/code/mtinti/extracting-esm-2-embeddings/notebook",
      "votes": null
    },
    {
      "id": "3366607",
      "postDate": "12/07/2025 20:34:56",
      "content": "<p>Thank you very much.</p>",
      "rawMarkdown": "Thank you very much.",
      "votes": null
    },
    {
      "id": "3366608",
      "postDate": "12/07/2025 20:35:25",
      "content": "<p>Should the embeddings be 26079  or 82404? </p>",
      "rawMarkdown": "Should the embeddings be 26079  or 82404?",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 3360582,
      "author_name": "mtinti",
      "author_url": "",
      "post_date": "12/02/2025 10:38:46",
      "content": "<p>See here for T5:\n<a href=\"https://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/613299\" target=\"_blank\">https://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/613299</a>\nAnd here for EMS-C:\n<a href=\"https://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/648148\" target=\"_blank\">https://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/648148</a></p>",
      "votes": null,
      "replies": [
        {
          "id": 3366607,
          "author_name": "alkahwaji",
          "author_url": "",
          "post_date": "12/07/2025 20:34:56",
          "content": "<p>Thank you very much.</p>",
          "votes": null,
          "replies": []
        }
      ]
    },
    {
      "id": 3360649,
      "author_name": "mtinti",
      "author_url": "",
      "post_date": "12/02/2025 12:15:25",
      "content": "<p>And EMS2, I did it a while ago and forgot to share…</p>\n<p><a href=\"https://www.kaggle.com/code/mtinti/extracting-esm-2-embeddings/notebook\" target=\"_blank\">https://www.kaggle.com/code/mtinti/extracting-esm-2-embeddings/notebook</a></p>",
      "votes": null,
      "replies": [
        {
          "id": 3366608,
          "author_name": "alkahwaji",
          "author_url": "",
          "post_date": "12/07/2025 20:35:25",
          "content": "<p>Should the embeddings be 26079  or 82404? </p>",
          "votes": null,
          "replies": []
        }
      ]
    }
  ],
  "raw_markdown_by_id": {
    "3360574": "Is there a method to obtain the embeddings for all proteins in the dataset? For several PLMs for ESM or ProtT5?",
    "3360582": "See here for T5:\nhttps://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/613299\nAnd here for EMS-C:\nhttps://www.kaggle.com/competitions/cafa-6-protein-function-prediction/discussion/648148",
    "3360649": "And EMS2, I did it a while ago and forgot to share...\n\nhttps://www.kaggle.com/code/mtinti/extracting-esm-2-embeddings/notebook",
    "3366607": "Thank you very much.",
    "3366608": "Should the embeddings be 26079  or 82404?"
  },
  "source": "meta"
}