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  "total": 101,
  "topics": [
    {
      "id": 702254,
      "title": "Contribute to LAFA: Longitudinal Assessment of Protein Function Annotation",
      "comment_count": 10,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 707700,
      "title": "Recap of Competition - Congratulations to the Winners!",
      "comment_count": 5,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 685532,
      "title": "Update, Thursday 9 April: the leaderboard rescore is now complete",
      "comment_count": 21,
      "views": 0,
      "votes": 11,
      "reused": true
    },
    {
      "id": 672663,
      "title": "CAFA 6: Thank you! What's next, and some clarificaitons.",
      "comment_count": 4,
      "views": 0,
      "votes": 14,
      "reused": true
    },
    {
      "id": 657539,
      "title": "[UPDATE:  Rescoring Complete] Fixes to GO Graph Processing & IA File — Leaderboard Rescoring in Progress",
      "comment_count": 9,
      "views": 0,
      "votes": 14,
      "reused": true
    },
    {
      "id": 611951,
      "title": "How to get started + Competition's Official Discord",
      "comment_count": 2,
      "views": 0,
      "votes": 15,
      "reused": true
    },
    {
      "id": 612014,
      "title": "Welcome to the CAFA 6 Challenge",
      "comment_count": 12,
      "views": 0,
      "votes": 19,
      "reused": true
    },
    {
      "id": 711635,
      "title": "2nd solution of CAFA 6: py-boost, GCN, and articles data",
      "comment_count": 7,
      "views": 0,
      "votes": 17,
      "reused": true
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      "id": 713376,
      "title": "6th Place Solution for the CAFA 6 Protein Function Prediction",
      "comment_count": 2,
      "views": 0,
      "votes": 12,
      "reused": true
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    {
      "id": 709383,
      "title": "1st Place Solution for the CAFA 6 Protein Function Prediction",
      "comment_count": 3,
      "views": 0,
      "votes": 20,
      "reused": true
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      "title": "5th Place Solution",
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      "views": 0,
      "votes": 13,
      "reused": true
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      "id": 703971,
      "title": "private leaderboard evaluation",
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      "views": 0,
      "votes": null,
      "reused": true
    },
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      "id": 709281,
      "title": "3rd place solution",
      "comment_count": 3,
      "views": 0,
      "votes": 15,
      "reused": true
    },
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      "id": 703907,
      "title": "Question about auto-selected final submission becoming Error after previous valid interim evaluations",
      "comment_count": 1,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 702750,
      "title": "Tie at 0.446 for positions 4-6: real or display rounding?",
      "comment_count": 21,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 699352,
      "title": "[UPDATE, Fri May 15th] Leaderboard Rescore - COMPLETE",
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      "views": 0,
      "votes": 7,
      "reused": true
    },
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      "id": 687790,
      "title": "Concerns about evaluation dataset and leaderboard inconsistency",
      "comment_count": 7,
      "views": 0,
      "votes": 1,
      "reused": true
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    {
      "id": 698355,
      "title": "What happen🥲",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 691231,
      "title": "Not able to submit predictions.",
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      "votes": null,
      "reused": true
    },
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      "id": 664359,
      "title": "Speeding up cafaeval",
      "comment_count": 11,
      "views": 0,
      "votes": 15,
      "reused": true
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      "id": 681811,
      "title": "PROTEA — Interactive GO term prediction & CAFA evaluation sandbox [live demo]",
      "comment_count": 3,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 686465,
      "title": "Where do we stand now?",
      "comment_count": 3,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 686218,
      "title": "Information about data used in March 2026 leaderboard update",
      "comment_count": 6,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 685397,
      "title": "No, I lose my mind, and you?",
      "comment_count": 5,
      "views": 0,
      "votes": 8,
      "reused": true
    },
    {
      "id": 681533,
      "title": "Methodological Writeup: Transformer Fine-Tuning, Rare-Label Dynamics, Ensemble Aggregation, and UniProt-Based Denoising",
      "comment_count": 4,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 672296,
      "title": "Inquiry regarding leaderboard status",
      "comment_count": 5,
      "views": 0,
      "votes": 5,
      "reused": true
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    {
      "id": 671902,
      "title": "Approaches for this competition ",
      "comment_count": 3,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 671983,
      "title": "'INTERNAL ERROR' MESSAGE WHEN ENTER THE COMPETITION MAIN PAGE",
      "comment_count": 3,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 671612,
      "title": "GOAlpha congratulations",
      "comment_count": 2,
      "views": 0,
      "votes": -3,
      "reused": true
    },
    {
      "id": 671766,
      "title": "My first proper competition",
      "comment_count": 1,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 671601,
      "title": "Late submissions and assessing contributions?",
      "comment_count": 2,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 671503,
      "title": "delay in processing submission",
      "comment_count": 20,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 671282,
      "title": "Submission file too large (10GB+) – timeout / out of disk error",
      "comment_count": 4,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 671333,
      "title": "A weird idea —— I don't even think I've understood this competition.",
      "comment_count": 3,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 670440,
      "title": "Time-Split Validation: Why is Partial Knowledge (PK) scoring so high?",
      "comment_count": 5,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 670747,
      "title": "Questions on private test scoring",
      "comment_count": 7,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 670659,
      "title": "Will anyone release a higher-scoring strategy in the last 5 days of the competition?",
      "comment_count": 5,
      "views": 0,
      "votes": -7,
      "reused": true
    },
    {
      "id": 669560,
      "title": "Generation of cafa6-protein-function-enhanced-nb-v2/submission.tsv",
      "comment_count": 2,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 670095,
      "title": "Extension for team merger and submission deadline",
      "comment_count": 1,
      "views": 0,
      "votes": -1,
      "reused": true
    },
    {
      "id": 668463,
      "title": "Kaggle scoring pending for 10 h",
      "comment_count": 5,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 659320,
      "title": "Exact Command For Evaluating Submission",
      "comment_count": 9,
      "views": 0,
      "votes": 9,
      "reused": true
    },
    {
      "id": 613138,
      "title": "# 🧬 From zero to ~0.269 LB using GOA UniProt (GAF) with “NOT”-free annotations",
      "comment_count": 31,
      "views": 0,
      "votes": 22,
      "reused": true
    },
    {
      "id": 615338,
      "title": "Seeking Collaborator: Evaluating LLM Reliability in Clinical Proteomics",
      "comment_count": 6,
      "views": 0,
      "votes": 9,
      "reused": true
    },
    {
      "id": 664239,
      "title": "Protein Function Prediction Software vs Methods",
      "comment_count": 7,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 666711,
      "title": "How to build proper validation pipeline?",
      "comment_count": 2,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 613516,
      "title": "Submission pending, taking forever to be scored",
      "comment_count": 28,
      "views": 0,
      "votes": 12,
      "reused": true
    },
    {
      "id": 655071,
      "title": "TSV Submission Failed",
      "comment_count": 7,
      "views": 0,
      "votes": 7,
      "reused": true
    },
    {
      "id": 664966,
      "title": "ESM3-C benefit vs ESM2",
      "comment_count": 3,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 665104,
      "title": "PDB files for the test superset",
      "comment_count": 5,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 664979,
      "title": "What is a useful toy problem to speed up prototyping?",
      "comment_count": 2,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 665082,
      "title": "Unused GO terms and IA",
      "comment_count": 2,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 612508,
      "title": "TSV submission only?",
      "comment_count": 8,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 664233,
      "title": "where to start?",
      "comment_count": 1,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 663527,
      "title": "Penalties for predicting GO terms in categories absent from ground truth",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 663136,
      "title": "Has anyone tried this method: DeepGO-SE",
      "comment_count": 1,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 657230,
      "title": "Inquiry regarding the benchmark entries on the LB (e.g., \"goa_predictions_Oct2025.tsv\")",
      "comment_count": 4,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 658368,
      "title": "Notice!!!:Ghost teammates in many competitions",
      "comment_count": 4,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 613809,
      "title": "go annotations of testset ids are in uniprot?[Question about the rules]",
      "comment_count": 6,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 648148,
      "title": "ESM-3/Cambrian Embeddings",
      "comment_count": 8,
      "views": 0,
      "votes": 23,
      "reused": true
    },
    {
      "id": 617644,
      "title": "What is the BLAST-Quick-SProF-Zero-Pred dataset used for?",
      "comment_count": 9,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 650818,
      "title": "Embeddings Questions",
      "comment_count": 4,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 644800,
      "title": "Possible evaluation problem",
      "comment_count": 5,
      "views": 0,
      "votes": 15,
      "reused": true
    },
    {
      "id": 619465,
      "title": "Concerns about train dataset",
      "comment_count": 5,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 612169,
      "title": "Question about the test superset",
      "comment_count": 10,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 640412,
      "title": "CAFA 6 manuscript co-authorship",
      "comment_count": 1,
      "views": 0,
      "votes": 6,
      "reused": true
    },
    {
      "id": 625621,
      "title": "Three significant digits",
      "comment_count": 22,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 638470,
      "title": "Are GO ontology accumulated and expanded only based on the Gene Ontology database?",
      "comment_count": 2,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 613229,
      "title": "anyone have face memory issue ",
      "comment_count": 3,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 627748,
      "title": "Clarification on the meaning and behavior of the score column in IA.tsv (Gene Ontology)",
      "comment_count": 2,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 613750,
      "title": "Biological Taxonomy",
      "comment_count": 1,
      "views": 0,
      "votes": 28,
      "reused": true
    },
    {
      "id": 614286,
      "title": "How to reproduce contest labels",
      "comment_count": 2,
      "views": 0,
      "votes": 8,
      "reused": true
    },
    {
      "id": 615447,
      "title": "How will the test evaluation handle proteins with known GO terms which gained new terms after the final submission deadline?",
      "comment_count": 4,
      "views": 0,
      "votes": 4,
      "reused": true
    },
    {
      "id": 619157,
      "title": "Is the public lb trustable",
      "comment_count": 2,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 614668,
      "title": "Creating a time-shifted validation environment (CAFA5)",
      "comment_count": 16,
      "views": 0,
      "votes": 16,
      "reused": true
    },
    {
      "id": 614270,
      "title": "Training data provided is not consistent with the description",
      "comment_count": 9,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 614145,
      "title": "How to evaluate according to the officer way ",
      "comment_count": 3,
      "views": 0,
      "votes": 3,
      "reused": true
    },
    {
      "id": 612582,
      "title": "How to accelerate your experiments for CAFA 6 competition!",
      "comment_count": 2,
      "views": 0,
      "votes": 40,
      "reused": true
    },
    {
      "id": 613638,
      "title": "Disadvantages of Teaming Up (especially in early stages)",
      "comment_count": 6,
      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 612410,
      "title": "Teaming up for the competition",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 613542,
      "title": "Is it possible to use diamond software?",
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      "views": 0,
      "votes": 1,
      "reused": true
    },
    {
      "id": 613256,
      "title": "Time limits for submission execution",
      "comment_count": 1,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 613082,
      "title": "Train Data train_terms.tsv",
      "comment_count": 4,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 612655,
      "title": "Can I use CAFA 5 1st place solution as my foundation?",
      "comment_count": 3,
      "views": 0,
      "votes": 5,
      "reused": true
    },
    {
      "id": 612553,
      "title": "Same UniProt IDs but different protein sequences in cafa5 and cafa6",
      "comment_count": 2,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 612459,
      "title": "How are probabilities in the submission file used for evaluation (if at all)?",
      "comment_count": 2,
      "views": 0,
      "votes": null,
      "reused": true
    },
    {
      "id": 612170,
      "title": "gpu requirements",
      "comment_count": 4,
      "views": 0,
      "votes": 2,
      "reused": true
    },
    {
      "id": 612097,
      "title": "CAFA-evaluator Python tool in Gene Ontology (the official CAFA evaluation software)",
      "comment_count": 2,
      "views": 0,
      "votes": 21,
      "reused": true
    },
    {
      "id": 611991,
      "title": "What is the size of the test set during the forecast period?",
      "comment_count": 1,
      "views": 0,
      "votes": 9,
      "reused": true
    }
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      "id": 614293,
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      "id": 613299,
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}