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Really good training pipeline for pytorch EfficientDet\n\nHi everyone!\n\nHi everyone!\n\nMy name is Okafor Sylvester Chukwuka, I am a student with interest in DL/CV. My research focus is on the improvement of wheat head detection. Would be to get corrections and suggestion.\n\nI hope it is useful for you, my friends! If you didn't read this kernel, don't forget to do it! :)\n\nHere I would like to share with you part for my training kernel:\n- [[Inference GWHD] EfficientDet](https://www.kaggle.com/code/okaforchukwuka/adaptive-abg-inference-efficientdet)","metadata":{"id":"9q3Suh_A1QEu"}},{"cell_type":"markdown","source":"## Main Idea\n\n\"I read [all public kernels about EfficientDet in kaggle community](https://www.kaggle.com/search?q=efficientdet+in%3Anotebooks) and understand that kaggle don't have really good working public kernels with good score. Why? You can see below picture about COCO AP for different architectures, I think everyone should be able to use such a strong tools EfficientDet for own research, lets do it!\" Alex Shonenkov\n\n<img src='https://miro.medium.com/max/2400/0*ApAKUWtseHcvRV2U.png' width=400>   \n\n","metadata":{"id":"2ot26zpo1QE2"}},{"cell_type":"code","source":"# from IPython import get_ipython\n# get_ipython().magic('reset -sf')","metadata":{"id":"ynKOejMjUMwN","execution":{"iopub.status.busy":"2024-02-13T02:13:30.094213Z","iopub.execute_input":"2024-02-13T02:13:30.094690Z","iopub.status.idle":"2024-02-13T02:13:30.127780Z","shell.execute_reply.started":"2024-02-13T02:13:30.094651Z","shell.execute_reply":"2024-02-13T02:13:30.126907Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"gpu_info = !nvidia-smi\ngpu_info = '\\n'.join(gpu_info)\nif gpu_info.find('failed') >= 0:\n  print('Not connected to a GPU')\nelse:\n  print(gpu_info)","metadata":{"id":"FmYP8Rgxiru3","outputId":"7f851c85-6949-40fa-834d-60aed5c72c53","execution":{"iopub.status.busy":"2024-02-13T02:13:35.404847Z","iopub.execute_input":"2024-02-13T02:13:35.405235Z","iopub.status.idle":"2024-02-13T02:13:35.423843Z","shell.execute_reply.started":"2024-02-13T02:13:35.405204Z","shell.execute_reply":"2024-02-13T02:13:35.422689Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"content='/kaggle'","metadata":{"id":"YUyR4asMClxs","execution":{"iopub.status.busy":"2024-02-13T02:13:38.097443Z","iopub.execute_input":"2024-02-13T02:13:38.097851Z","iopub.status.idle":"2024-02-13T02:13:38.102892Z","shell.execute_reply.started":"2024-02-13T02:13:38.097816Z","shell.execute_reply":"2024-02-13T02:13:38.101799Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"!pip install --no-deps $content'/input/timm-package/timm-0.1.26-py3-none-any.whl' > /dev/null\n# !pip install --no-deps '../input/pycocotools/pycocotools-2.0-cp37-cp37m-linux_x86_64.whl' > /dev/null\n!pip install pycocotools\n!pip install wandb -q","metadata":{"id":"WYt9pFws1QE4","outputId":"829fb84d-2f8b-4c27-fd8e-b4e8b8fd08af","execution":{"iopub.status.busy":"2024-02-13T02:13:41.043450Z","iopub.execute_input":"2024-02-13T02:13:41.044130Z","iopub.status.idle":"2024-02-13T02:14:15.102683Z","shell.execute_reply.started":"2024-02-13T02:13:41.044082Z","shell.execute_reply":"2024-02-13T02:14:15.101230Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"# import sys\n# sys.path.insert(0, f\"{content}/input/timm-efficientdet-pytorch\")\n# sys.path.insert(0, f\"{content}/input/omegaconf\")\n\n# import torch\n# import os\n# from datetime import datetime\n# import time\n# import math\n# import random\n# import cv2\n# import pandas as pd\n# import numpy as np\n# import joblib\n# import albumentations as A\n# import matplotlib.pyplot as plt\n# import torch.nn as nn\n# from torchvision.utils import make_grid\n# from albumentations.augmentations.utils import read_rgb_image\n# from albumentations.pytorch.transforms import ToTensorV2\n# from typing import Callable, List, Tuple, Union\n# from albumentations import to_tuple\n# from albumentations import functional as F\n# from sklearn.model_selection import StratifiedKFold\n# from torch.utils.data import Dataset,DataLoader\n# from torch.utils.data.sampler import SequentialSampler, RandomSampler\n# from tqdm.auto import tqdm\n# from tqdm import tqdm_notebook\n# from glob import glob\n# import wandb\n# import itertools\n# from typing import NamedTuple\n# import scipy.stats as stats\n\n# SEED = 42\n\n# def seed_everything(seed):\n#     random.seed(seed)\n#     os.environ['PYTHONHASHSEED'] = str(seed)\n#     np.random.seed(seed)\n#     torch.manual_seed(seed)\n#     torch.cuda.manual_seed(seed)\n#     torch.backends.cudnn.deterministic = True\n#     torch.backends.cudnn.benchmark = True\n\n# seed_everything(SEED)","metadata":{"id":"X0QIM4bk1QE9","execution":{"iopub.status.busy":"2024-02-13T02:15:30.313886Z","iopub.execute_input":"2024-02-13T02:15:30.314428Z","iopub.status.idle":"2024-02-13T02:15:30.322508Z","shell.execute_reply.started":"2024-02-13T02:15:30.314387Z","shell.execute_reply":"2024-02-13T02:15:30.321249Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"import sys\nsys.path.insert(0, f\"{content}/input/wheat-detection-python-file\")\nsys.path.insert(0, \"../input/timm-efficientdet-pytorch\")\nsys.path.insert(0, \"../input/omegaconf\")\nsys.path.insert(0, \"../input/weightedboxesfusion\")\nsys.path.insert(0, \"../input/my-ablu\")","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:15:32.670385Z","iopub.execute_input":"2024-02-13T02:15:32.670799Z","iopub.status.idle":"2024-02-13T02:15:32.677402Z","shell.execute_reply.started":"2024-02-13T02:15:32.670763Z","shell.execute_reply":"2024-02-13T02:15:32.676200Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"timm='../../opt/conda/lib/python3.10/site-packages/timm'\n# timm='../../usr/local/lib/python3.10/dist-packages/timm'\n!find $timm -name 'helpers.py'","metadata":{"id":"hFBjIFmO1QE-","outputId":"57f90b48-9d64-4b75-877b-512aee51ef9c","execution":{"iopub.status.busy":"2024-02-13T02:15:34.336513Z","iopub.execute_input":"2024-02-13T02:15:34.337378Z","iopub.status.idle":"2024-02-13T02:15:35.465731Z","shell.execute_reply.started":"2024-02-13T02:15:34.337338Z","shell.execute_reply":"2024-02-13T02:15:35.464317Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"!cat  $timm/models/layers/helpers.py","metadata":{"id":"PF_fP6uS1QE-","outputId":"29f9cfc4-22b6-41af-fe34-351bf9e68bf0","execution":{"iopub.status.busy":"2024-02-13T02:15:37.036597Z","iopub.execute_input":"2024-02-13T02:15:37.037315Z","iopub.status.idle":"2024-02-13T02:15:38.142068Z","shell.execute_reply.started":"2024-02-13T02:15:37.037265Z","shell.execute_reply":"2024-02-13T02:15:38.140844Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"%%writefile $timm/models/layers/helpers.py\n\"\"\" Layer/Module Helpers\n\nHacked together by / Copyright 2020 Ross Wightman\n\"\"\"\n\nfrom itertools import repeat\nimport collections.abc as container_abcs\n\n# From PyTorch internals\ndef _ntuple(n):\n    def parse(x):\n        if isinstance(x, container_abcs.Iterable):\n            return x\n        return tuple(repeat(x, n))\n    return parse\n\n\ntup_single = _ntuple(1)\ntup_pair = _ntuple(2)\ntup_triple = _ntuple(3)\ntup_quadruple = _ntuple(4)\n","metadata":{"id":"z28BsOuf1QE_","outputId":"a9c18491-08c2-4700-9eb2-a0b920cf74a1","execution":{"iopub.status.busy":"2024-02-13T02:15:41.343763Z","iopub.execute_input":"2024-02-13T02:15:41.344165Z","iopub.status.idle":"2024-02-13T02:15:41.354555Z","shell.execute_reply.started":"2024-02-13T02:15:41.344131Z","shell.execute_reply":"2024-02-13T02:15:41.353221Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"import cv2\nimport torch\nimport numpy as np\nimport pandas as pd\nfrom adaptive_alpha_beta_gamma import AdaptiveABGamma\nfrom random_guided_filter import AdaptiveABGamma_gf\nfrom torch.utils.data.sampler import SequentialSampler, RandomSampler\nfrom torch.utils.data import Dataset,DataLoader\nfrom models import net\nimport pandas as pd\nfrom my_utils import *\nfrom dataset_utils import *\nfrom prepare_data import *\nfrom FDA import FDA\nimport shutil\nfrom model_fitter import *\nimport joblib\nimport time\nfrom datetime import datetime\nfrom create_dataset import DatasetRetriever, get_transform, train_dataset, get_valid_transforms, get_train_transforms, collate_fn","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:15:45.291734Z","iopub.execute_input":"2024-02-13T02:15:45.292422Z","iopub.status.idle":"2024-02-13T02:16:06.988861Z","shell.execute_reply.started":"2024-02-13T02:15:45.292386Z","shell.execute_reply":"2024-02-13T02:16:06.987711Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"# this is a bool variable that will allow the weights and bias for experimentation and logging, to create weights and bias account visit this link: https://wandb.ai/\nwandb_account = False","metadata":{"id":"vCkXUBy7ygaW","execution":{"iopub.status.busy":"2024-02-13T02:16:06.990547Z","iopub.execute_input":"2024-02-13T02:16:06.991147Z","iopub.status.idle":"2024-02-13T02:16:06.996768Z","shell.execute_reply.started":"2024-02-13T02:16:06.991109Z","shell.execute_reply":"2024-02-13T02:16:06.995652Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"#  input your API from wandb\nyour_wandb_api = 'faae106bb9137a5832d9************'","metadata":{"id":"T1WQ6MG5ym76","execution":{"iopub.status.busy":"2024-02-13T02:16:06.998220Z","iopub.execute_input":"2024-02-13T02:16:06.999491Z","iopub.status.idle":"2024-02-13T02:16:07.014793Z","shell.execute_reply.started":"2024-02-13T02:16:06.999453Z","shell.execute_reply":"2024-02-13T02:16:07.013366Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"# # enter your Weight and bias API key\n# if wandb_account:\n#     wandb.login(key=your_wandb_api)","metadata":{"id":"8NiRC6PJyXi0","execution":{"iopub.status.busy":"2024-02-13T02:16:07.018013Z","iopub.execute_input":"2024-02-13T02:16:07.018435Z","iopub.status.idle":"2024-02-13T02:16:07.031134Z","shell.execute_reply.started":"2024-02-13T02:16:07.018398Z","shell.execute_reply":"2024-02-13T02:16:07.030098Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"marking.head()","metadata":{"id":"ZAqPY4ix1QFC","outputId":"bb1ed205-c78b-4be4-aea8-e01117909c1d","execution":{"iopub.status.busy":"2024-02-13T02:16:07.032421Z","iopub.execute_input":"2024-02-13T02:16:07.033376Z","iopub.status.idle":"2024-02-13T02:16:07.065917Z","shell.execute_reply.started":"2024-02-13T02:16:07.033337Z","shell.execute_reply":"2024-02-13T02:16:07.064735Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"About data splitting you can read [here](https://www.kaggle.com/shonenkov/wbf-approach-for-ensemble):","metadata":{"id":"6WTROJtB1QFD"}},{"cell_type":"code","source":"df_folds.head()","metadata":{"id":"4GbSu9ub1QFI","outputId":"7b3cd969-68d6-4975-adf3-c5dac2e790a5","execution":{"iopub.status.busy":"2024-02-13T02:20:16.971783Z","iopub.execute_input":"2024-02-13T02:20:16.972701Z","iopub.status.idle":"2024-02-13T02:20:16.984974Z","shell.execute_reply.started":"2024-02-13T02:20:16.972655Z","shell.execute_reply":"2024-02-13T02:20:16.983958Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"TRAIN_ROOT_PATH = f'{content}/input/global-wheat-detection/train'\n\n\nclass DatasetRetriever(Dataset):\n\n    def __init__(self, paths, dataframe, preprocess=None, transforms=None, target_dict=target_dict, max_value=255.0, test=False):\n        super().__init__()\n\n        self.image_ids = paths\n        self.marking = dataframe\n        self.preprocess = preprocess\n        self.transforms = transforms\n        self.test = test\n        self.max_value = max_value\n        self.reference_dict=target_dict\n\n    def __getitem__(self, index: int):\n        image_id = self.image_ids[index]\n\n        p=random.random()\n        # image, boxes = self.load_image_and_boxes(index)\n        if self.test or p > 0.5:\n            image, boxes = self.load_image_and_boxes(index)\n        elif p > 0.4:\n            image, boxes = self.load_mixup_images_and_boxes(index)\n        else:\n            image, boxes = self.load_cutmix_image_and_boxes(index)\n\n        # there is only one class\n        labels = torch.ones((boxes.shape[0],), dtype=torch.int64)\n\n        target = {}\n        target['boxes'] = boxes\n        target['labels'] = labels\n        target['image_id'] = torch.tensor([index])\n\n        if self.transforms:\n            for i in range(10):\n                sample = self.transforms(**{\n                    'image': image,\n                    'bboxes': target['boxes'],\n                    'labels': labels\n                })\n                if len(sample['bboxes']) > 0:\n                    image = sample['image']\n                    target['boxes'] = torch.stack(tuple(map(torch.tensor, zip(*sample['bboxes'])))).permute(1, 0)\n                    target['boxes'][:,[0,1,2,3]] = target['boxes'][:,[1,0,3,2]]  #yxyx: be warning\n                    target['labels'] = torch.stack(sample['labels']) # <--- add this!\n                    break\n\n        return image, target, image_id\n\n    def __len__(self) -> int:\n        return self.image_ids.shape[0]\n\n    def load_image_and_boxes(self, index):\n        image_id = self.image_ids[index]\n        image = cv2.imread(f'{TRAIN_ROOT_PATH}/{image_id}.jpg', cv2.IMREAD_COLOR)\n        image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB) #.astype(np.float32)\n        image = (image / self.max_value).astype(np.float32)\n\n        p=random.random()\n        if self.preprocess and p > 0.1:\n            ref_dict = self.reference_dict.copy()\n            ref_dict.pop(self.marking.loc[index]['source'])\n            my_list = []\n            for k, v in ref_dict.items():\n                my_list.extend(v)\n            np.random.shuffle(my_list)\n            ref_list = np.random.choice(my_list)\n            # print(ref_list)\n            preprocessing = A.Compose([\n                                        FDA(ref_list,\n                                            beta_limit=(0.008, 0.02),\n                                            p=0.5,\n                                            read_fn=read_rgb_images,\n                                            num=4),\n                                        # AdaptiveABGamma(patch_size=64,\n                                        #                 alpha_limit=(0.5, 1.2), beta_limit=(-0.1, 0.22), gamma_limit=(0.7, 1.5),\n                                        #                 max_value=1.0, num=4, p=0.4)\n                                    ])\n\n            image = preprocessing(image=image)['image']\n#         if self.marking.loc[index]['source'] in ['arvalis_2','rres_1','inrae_1']:\n\n#             if self.preprocess[0]:\n#                 image = self.preprocess[0](image=image)['image']\n#         else:\n#             if self.preprocess[1]:\n#                 image = self.preprocess[1](image=image)['image']\n        # image /= 255.0\n        records = self.marking[self.marking['image_id'] == image_id]\n        boxes = records[['x', 'y', 'w', 'h']].values\n        boxes[:, 2] = boxes[:, 0] + boxes[:, 2]\n        boxes[:, 3] = boxes[:, 1] + boxes[:, 3]\n        return image, boxes\n\n    def load_cutmix_image_and_boxes(self, index, imsize=1024):\n        \"\"\"\n        Also known as Mosaic\n        This implementation of cutmix author:  https://www.kaggle.com/nvnnghia\n        Refactoring and adaptation: https://www.kaggle.com/shonenkov\n        \"\"\"\n        w, h = imsize, imsize\n        s = imsize // 2\n\n        xc, yc = [int(random.uniform(imsize * 0.25, imsize * 0.75)) for _ in range(2)]  # center x, y\n        indexes = [index] + [random.randint(0, self.image_ids.shape[0] - 1) for _ in range(3)]\n\n        result_image = np.full((imsize, imsize, 3), 1, dtype=np.float32)\n        result_boxes = []\n\n        for i, index in enumerate(indexes):\n            image, boxes = self.load_image_and_boxes(index)\n            if i == 0:\n                x1a, y1a, x2a, y2a = max(xc - w, 0), max(yc - h, 0), xc, yc  # xmin, ymin, xmax, ymax (large image)\n                x1b, y1b, x2b, y2b = w - (x2a - x1a), h - (y2a - y1a), w, h  # xmin, ymin, xmax, ymax (small image)\n            elif i == 1:  # top right\n                x1a, y1a, x2a, y2a = xc, max(yc - h, 0), min(xc + w, s * 2), yc\n                x1b, y1b, x2b, y2b = 0, h - (y2a - y1a), min(w, x2a - x1a), h\n            elif i == 2:  # bottom left\n                x1a, y1a, x2a, y2a = max(xc - w, 0), yc, xc, min(s * 2, yc + h)\n                x1b, y1b, x2b, y2b = w - (x2a - x1a), 0, max(xc, w), min(y2a - y1a, h)\n            elif i == 3:  # bottom right\n                x1a, y1a, x2a, y2a = xc, yc, min(xc + w, s * 2), min(s * 2, yc + h)\n                x1b, y1b, x2b, y2b = 0, 0, min(w, x2a - x1a), min(y2a - y1a, h)\n            result_image[y1a:y2a, x1a:x2a] = image[y1b:y2b, x1b:x2b]\n            padw = x1a - x1b\n            padh = y1a - y1b\n\n            boxes[:, 0] += padw\n            boxes[:, 1] += padh\n            boxes[:, 2] += padw\n            boxes[:, 3] += padh\n\n            result_boxes.append(boxes)\n\n        result_boxes = np.concatenate(result_boxes, 0)\n        np.clip(result_boxes[:, 0:], 0, 2 * s, out=result_boxes[:, 0:])\n        result_boxes = result_boxes.astype(np.int32)\n        result_boxes = result_boxes[np.where((result_boxes[:,2]-result_boxes[:,0])*(result_boxes[:,3]-result_boxes[:,1]) > 0)]\n        return result_image, result_boxes\n\n    def load_mixup_images_and_boxes(self, index, imsize=1024, alpha=1.0):\n        \"\"\"\n        This implementation of mixup author:  https://github.com/5m0k3\n        \"\"\"\n        images, bboxes = self.load_image_and_boxes(index)\n\n        s_index = random.randint(0, self.image_ids.shape[0] - 1)\n        shuffled_images, shuffled_bboxes= self.load_image_and_boxes(s_index)\n\n        # Generate image weight (minimum 0.4 and maximum 0.6)\n        #lam = np.clip(np.random.beta(alpha, alpha), 0.4, 0.6)\n        lam=0.5\n\n        # Weighted Mixup\n        mixedup_images = lam*images + (1 - lam)*shuffled_images\n        mixedup_bboxes = np.concatenate((bboxes,shuffled_bboxes), 0)\n\n        return mixedup_images, mixedup_bboxes\n","metadata":{"id":"4352Cv1J1QFK","execution":{"iopub.status.busy":"2024-02-13T02:20:18.068730Z","iopub.execute_input":"2024-02-13T02:20:18.069400Z","iopub.status.idle":"2024-02-13T02:20:18.109956Z","shell.execute_reply.started":"2024-02-13T02:20:18.069362Z","shell.execute_reply":"2024-02-13T02:20:18.108457Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"image = cv2.imread(f'{target_path[1]}', cv2.IMREAD_COLOR)\nimage = cv2.cvtColor(image, cv2.COLOR_BGR2RGB) #.astype(np.float32)\n\n\nfig, ax = plt.subplots(1, 2, figsize=(10, 5))\n\nax[0].set_axis_off()\nax[0].imshow(image)\n\naug = A.Compose([\n                AdaptiveABGamma(patch_size=128,\n                                alpha_limit=(0.7, 1.5), beta_limit=(-0.1, 0.25), gamma_limit=(0.7, 1.5),\n                                max_value=255.0,\n                                num=1,\n                                always_apply=True, p=1),\n                        ])\nres = aug(image=image)['image']\n# plt.imshow(res)\nax[1].set_axis_off()\nax[1].imshow(res)","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:18.553006Z","iopub.execute_input":"2024-02-13T02:20:18.553533Z","iopub.status.idle":"2024-02-13T02:20:19.768483Z","shell.execute_reply.started":"2024-02-13T02:20:18.553485Z","shell.execute_reply":"2024-02-13T02:20:19.767409Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"# id = 'a8f992d8d'\nid = 'a4c89beca'\n# id = '0e0a0483e'\n\nimage = cv2.imread(f\"/kaggle/input/global-wheat-detection/train/{id}.jpg\", cv2.IMREAD_COLOR)\nimage = cv2.cvtColor(image, cv2.COLOR_BGR2RGB) #.astype(np.float32)\n\nfig, ax = plt.subplots(1, 2, figsize=(10, 5))\n\nax[0].set_axis_off()\nax[0].imshow(image)\n\naug = A.Compose([\n                AdaptiveABGamma_gf(\n                                   r=5,\n                                   e=0.02,\n                                gamma_limit=(0.7, 1.5),\n                                max_value=255.0, p=1),\n\n                        ])\nres = aug(image=image)['image'] #.transpose((1,2,0))\n# plt.imshow(res)\nax[1].set_axis_off()\nax[1].imshow(res)","metadata":{"id":"hBI9oKDg1QFV","outputId":"3d72eaf4-c301-4245-9b77-a6e045589a1e","execution":{"iopub.status.busy":"2024-02-13T02:20:19.770413Z","iopub.execute_input":"2024-02-13T02:20:19.771834Z","iopub.status.idle":"2024-02-13T02:20:21.386438Z","shell.execute_reply.started":"2024-02-13T02:20:19.771771Z","shell.execute_reply":"2024-02-13T02:20:21.385189Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"display_augmentation_image_grid(grid_start_img=0, nimgs=20, nrows=2, ncols=4, guided_filter=True, figsize=(10, 5))","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:21.387799Z","iopub.execute_input":"2024-02-13T02:20:21.388159Z","iopub.status.idle":"2024-02-13T02:20:27.006638Z","shell.execute_reply.started":"2024-02-13T02:20:21.388128Z","shell.execute_reply":"2024-02-13T02:20:27.005335Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"image = cv2.imread(f'{target_path[2]}', cv2.IMREAD_COLOR)\nimage = cv2.cvtColor(image, cv2.COLOR_BGR2RGB) #.astype(np.float32)\nvisualize_aabg_images(image, title=None,\n                      alpha_limit=((0.5, 0.5), (1.0, 1.0), (1.5, 1.5)),\n                      beta_limit=((0.0, 0.0), (0.0, 0.0), (0.0, 0.0)),\n                      gamma_limit=((1.0, 1.0),(1.0, 1.0),(1.0, 1.0)),\n                      min=0,max=255)","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:27.010082Z","iopub.execute_input":"2024-02-13T02:20:27.010502Z","iopub.status.idle":"2024-02-13T02:20:30.480809Z","shell.execute_reply.started":"2024-02-13T02:20:27.010465Z","shell.execute_reply":"2024-02-13T02:20:30.479272Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"image = cv2.imread(f'{target_path[3]}', cv2.IMREAD_COLOR)\nimage = cv2.cvtColor(image, cv2.COLOR_BGR2RGB) #.astype(np.float32)\nvisualize_gf_images(image, title=None, min=0,max=255)","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:30.482900Z","iopub.execute_input":"2024-02-13T02:20:30.484314Z","iopub.status.idle":"2024-02-13T02:20:35.314617Z","shell.execute_reply.started":"2024-02-13T02:20:30.484231Z","shell.execute_reply":"2024-02-13T02:20:35.313513Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"channel_drop_range=(1, 1)\nfill_value=0\nreference_imgs = reference_dict['arvalis_3']\n\npreprocess = A.Compose([\n                        FDA(reference_imgs[20],  #target_path[7:10],\n                            beta_limit=(0.008, 0.02),\n                            p=1.0,\n                            read_fn=lambda x: x, #read_rgb_images,\n                            num=4),\n\n#                         AdaptiveABGamma(patch_size=16,\n                #                         alpha_limit=(2.0, 2.5), beta_limit=(-0.1, 0.2), gamma_limit=(0.5, 0.8),\n                #                         max_value=1.0, num=4, p=1.0),\n#                         A.CLAHE(clip_limit=6, tile_grid_size=(10, 10), p=0.5),\n                        ])\n\nimage = cv2.imread(f'{target_path[3]}', cv2.IMREAD_COLOR)\nimage = cv2.cvtColor(image, cv2.COLOR_BGR2RGB)\nimage = (image / 255.0).astype(np.float32)\n\nres = preprocess(image=image)['image']\nplt.imshow(res)","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:35.315868Z","iopub.execute_input":"2024-02-13T02:20:35.317268Z","iopub.status.idle":"2024-02-13T02:20:36.060118Z","shell.execute_reply.started":"2024-02-13T02:20:35.317211Z","shell.execute_reply":"2024-02-13T02:20:36.059294Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"visual_hist(image, reference_imgs[35],res, title='FDA', max=1.0)","metadata":{"id":"JdEhVlo71QFb","outputId":"b81abbe3-3b33-4a3e-9596-1b9adeceeabf","execution":{"iopub.status.busy":"2024-02-13T02:20:36.061334Z","iopub.execute_input":"2024-02-13T02:20:36.062094Z","iopub.status.idle":"2024-02-13T02:20:40.935572Z","shell.execute_reply.started":"2024-02-13T02:20:36.062060Z","shell.execute_reply":"2024-02-13T02:20:40.934468Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"\nimage = cv2.imread(f'{target_path[1]}', cv2.IMREAD_COLOR)\nimage = cv2.cvtColor(image, cv2.COLOR_BGR2RGB)\nimage = (image / 255.0).astype(np.float32)\nvisual_ABG_FDA_images(image, target_path[0], title=None, min=0,max=255)","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:40.937044Z","iopub.execute_input":"2024-02-13T02:20:40.938064Z","iopub.status.idle":"2024-02-13T02:20:44.748315Z","shell.execute_reply.started":"2024-02-13T02:20:40.938024Z","shell.execute_reply":"2024-02-13T02:20:44.746795Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"bs = 16\nnum_workers = 2\nfold_number=0\ntrain_dataset = DatasetRetriever(df_folds[df_folds['fold'] != fold_number].index.values,\n                                 marking ,\n                                 preprocess=True,\n                                 transforms=get_train_transforms(),\n                                 max_value=255.0,\n                                 test=False)\n\nvalidation_dataset = DatasetRetriever(df_folds[df_folds['fold'] == fold_number].index.values,\n                                     marking,\n                                     preprocess=None,\n                                     transforms=get_valid_transforms(),\n                                     test=True) #transforms=get_valid_transform())\n\ntraining_loader = DataLoader(train_dataset, batch_size = bs ,shuffle = True,collate_fn=collate_fn , num_workers=num_workers)\nvalidation_loader = DataLoader(validation_dataset, batch_size = bs ,shuffle = True,collate_fn=collate_fn , num_workers=num_workers)","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:44.753161Z","iopub.execute_input":"2024-02-13T02:20:44.754025Z","iopub.status.idle":"2024-02-13T02:20:44.765998Z","shell.execute_reply.started":"2024-02-13T02:20:44.753986Z","shell.execute_reply":"2024-02-13T02:20:44.764719Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"train_dataset[0][0].shape","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:44.767470Z","iopub.execute_input":"2024-02-13T02:20:44.768622Z","iopub.status.idle":"2024-02-13T02:20:45.200889Z","shell.execute_reply.started":"2024-02-13T02:20:44.768585Z","shell.execute_reply":"2024-02-13T02:20:45.199974Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"image, target, image_id = train_dataset[1]\nboxes = target['boxes'].cpu().numpy().astype(np.int32)\n\nnumpy_image = image.permute(1,2,0).cpu().numpy()\n\nfig, ax = plt.subplots(1, 1, figsize=(16, 8))\n# image.astype(np.uint8).copy()\nfor box in boxes:\n    cv2.rectangle(numpy_image.astype(np.uint8).copy(), (box[1], box[0]), (box[3],  box[2]), (0, 1, 0), 2)\n\nax.set_axis_off()\nax.imshow(numpy_image)","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:45.202444Z","iopub.execute_input":"2024-02-13T02:20:45.203506Z","iopub.status.idle":"2024-02-13T02:20:45.823805Z","shell.execute_reply.started":"2024-02-13T02:20:45.203470Z","shell.execute_reply":"2024-02-13T02:20:45.822595Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"view_loader(training_loader)","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:45.825486Z","iopub.execute_input":"2024-02-13T02:20:45.826173Z","iopub.status.idle":"2024-02-13T02:20:58.713559Z","shell.execute_reply.started":"2024-02-13T02:20:45.826137Z","shell.execute_reply":"2024-02-13T02:20:58.711514Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"def collate_fn(batch):\n    return tuple(zip(*batch))","metadata":{"id":"lhWAbcE_1QFd","execution":{"iopub.status.busy":"2024-02-13T02:20:58.715464Z","iopub.execute_input":"2024-02-13T02:20:58.715845Z","iopub.status.idle":"2024-02-13T02:20:58.722125Z","shell.execute_reply.started":"2024-02-13T02:20:58.715811Z","shell.execute_reply":"2024-02-13T02:20:58.720498Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"fold_number = 0\n\nbs = 4\nnum_workers = 2\ntrain_dataset = DatasetRetriever(df_folds[df_folds['fold'] != fold_number].index.values,\n                                 marking ,\n                                 preprocess=True,\n                                 transforms=get_train_transforms(),\n                                 max_value=255.0,\n                                 test=False)\n\nvalidation_dataset = DatasetRetriever(df_folds[df_folds['fold'] == fold_number].index.values,\n                                     marking,\n                                     preprocess=None,\n                                     transforms=get_valid_transforms(),\n                                     test=True) #transforms=get_valid_transform())\n","metadata":{"execution":{"iopub.status.busy":"2024-02-13T02:20:58.723847Z","iopub.execute_input":"2024-02-13T02:20:58.724287Z","iopub.status.idle":"2024-02-13T02:20:58.742567Z","shell.execute_reply.started":"2024-02-13T02:20:58.724216Z","shell.execute_reply":"2024-02-13T02:20:58.741518Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"## Fitter","metadata":{"id":"HFXAz-jy1QFq"}},{"cell_type":"code","source":"DEVICE = torch.device('cuda' if torch.cuda.is_available() else 'cpu')\n\nwandb_config = {\n    \"wandb_account\" : wandb_account,\n    'wandb_entity' : 'torch-team',\n    'wandb_project' : \"WheatHead_Detection\",\n    \"learning_rate\" : 0.002,\n    \"architecture\" : \"EfficientDet5 object detection\",\n    \"dataset\" : \"GWHD\",\n    \"batch_size\" : bs,\n    \"epochs\" : 1,\n    \"step_scheduler\" : False,\n    \"validation_scheduler\" : True,\n    \"weight_decay\" : 1e-4,\n    \"opt_func\" : torch.optim.AdamW,\n    \"seed\" : 42,\n    # \"image_size\" : (IMAGE_H,IMAGE_W),\n    \"DEVICE\" : DEVICE,\n    \"verbose\" : True,\n    \"verbose_step\" : 1\n}","metadata":{"id":"mpWjWvoa0KvJ","execution":{"iopub.status.busy":"2024-02-13T02:28:51.651942Z","iopub.execute_input":"2024-02-13T02:28:51.652467Z","iopub.status.idle":"2024-02-13T02:28:51.660732Z","shell.execute_reply.started":"2024-02-13T02:28:51.652430Z","shell.execute_reply":"2024-02-13T02:28:51.659343Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"class TrainGlobalConfig:\n    num_workers = 2\n    batch_size = wandb_config['batch_size']\n    n_epochs = wandb_config['epochs'] # n_epochs = 40\n    lr = 0.0002\n\n    folder = 'effdet5-cutmix-augmix'\n\n    # --------------------\n    wandb_account = wandb_config['wandb_account']\n    wandb_entity = wandb_config['wandb_entity']\n    wandb_project = wandb_config['wandb_project']\n    # -------------------\n    verbose = wandb_config['verbose']\n    verbose_step = wandb_config['verbose_step']\n    # -------------------\n\n    # --------------------\n    step_scheduler = wandb_config['step_scheduler']  # do scheduler.step after optimizer.step\n    validation_scheduler = wandb_config['validation_scheduler']  # do scheduler.step after validation stage loss\n\n#     SchedulerClass = torch.optim.lr_scheduler.OneCycleLR\n#     scheduler_params = dict(\n#         max_lr=0.001,\n#         epochs=n_epochs,\n#         steps_per_epoch=int(len(train_dataset) / batch_size),\n#         pct_start=0.1,\n#         anneal_strategy='cos',\n#         final_div_factor=10**5\n#     )\n\n    SchedulerClass = torch.optim.lr_scheduler.ReduceLROnPlateau\n    # SchedulerClass = torch.optim.lr_scheduler.ExponentialLR\n    # SchedulerClass = torch.optim.lr_scheduler.StepLR\n    scheduler_params = dict(\n        mode='min',\n        factor=0.5,\n        patience=1,\n        verbose=False,\n        threshold=0.0001,\n        threshold_mode='abs',\n        cooldown=0,\n        min_lr=1e-8,\n        eps=1e-08\n    )\n    # scheduler_params = dict(step_size=5, gamma=0.1, last_epoch=-1, verbose=False)\n    # dict(gamma=0.75, last_epoch=-1, verbose=False)\n    # --------------------","metadata":{"id":"A4aHN-hh1QFs","execution":{"iopub.status.busy":"2024-02-13T02:28:54.555348Z","iopub.execute_input":"2024-02-13T02:28:54.555753Z","iopub.status.idle":"2024-02-13T02:28:54.565805Z","shell.execute_reply.started":"2024-02-13T02:28:54.555721Z","shell.execute_reply":"2024-02-13T02:28:54.564792Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"import locale\ndef getpreferredencoding(do_setlocale = True):\n    return \"UTF-8\"\nlocale.getpreferredencoding = getpreferredencoding","metadata":{"id":"_HtX3Xr7p223","execution":{"iopub.status.busy":"2024-02-13T02:28:56.403409Z","iopub.execute_input":"2024-02-13T02:28:56.404202Z","iopub.status.idle":"2024-02-13T02:28:56.410713Z","shell.execute_reply.started":"2024-02-13T02:28:56.404152Z","shell.execute_reply":"2024-02-13T02:28:56.409352Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"!mkdir  $content/working/data","metadata":{"id":"T_-2ZyJf1QFw","outputId":"200c3e72-9a0a-4e15-cc9d-bce04624c191","execution":{"iopub.status.busy":"2024-02-13T02:28:57.430271Z","iopub.execute_input":"2024-02-13T02:28:57.430728Z","iopub.status.idle":"2024-02-13T02:28:58.566014Z","shell.execute_reply.started":"2024-02-13T02:28:57.430694Z","shell.execute_reply":"2024-02-13T02:28:58.564297Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"# shutil.rmtree('effdet5-cutmix-augmix')\n# shutil.rmtree('effdet5-cutmix-augmix')","metadata":{"id":"Ez6rW5r0vBft","execution":{"iopub.status.busy":"2024-02-13T02:29:01.326074Z","iopub.execute_input":"2024-02-13T02:29:01.326597Z","iopub.status.idle":"2024-02-13T02:29:01.332365Z","shell.execute_reply.started":"2024-02-13T02:29:01.326555Z","shell.execute_reply":"2024-02-13T02:29:01.331308Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"def run_training(path=True, first_training=True):\n    device = torch.device('cuda:0')\n    net.to(device)\n\n    train_loader = torch.utils.data.DataLoader(\n        train_dataset,\n        batch_size=TrainGlobalConfig.batch_size,\n        sampler=RandomSampler(train_dataset),\n        pin_memory=False,\n        drop_last=True,\n        num_workers=TrainGlobalConfig.num_workers,\n        collate_fn=collate_fn,\n    )\n    val_loader = torch.utils.data.DataLoader(\n        validation_dataset,\n        batch_size=TrainGlobalConfig.batch_size,\n        num_workers=TrainGlobalConfig.num_workers,\n        shuffle=False,\n        sampler=SequentialSampler(validation_dataset),\n        pin_memory=False,\n        collate_fn=collate_fn,\n    )\n\n    # enter your Weight and bias API key\n    if wandb_config['wandb_account']:\n        # enter your Weight and bias API key\n        wandb.login(key=your_wandb_api)\n        # start a new wandb run to track this script\n        wandb.init(\n            # set the wandb project where this run will be logged\n            entity=wandb_config['wandb_entity'],\n            project=wandb_config['wandb_project'],\n            # track hyperparameters and run metadata\n            config=wandb_config,\n            save_code = True,\n        )\n\n    fitter = Fitter(model=net, device=device, config=TrainGlobalConfig)\n    if first_training:\n        # save the model to a file\n        joblib.dump(train_loader, f'{content}/working/data/training_data_loader.joblib')\n        joblib.dump(val_loader, f'{content}/working/data/validation_data_loader.joblib')\n\n    else:\n        # load the saved model\n        train_loader = joblib.load(f'{content}/working/data/training_data_loader.joblib')\n        val_loader = joblib.load(f'{content}/working/data/validation_data_loader.joblib')\n\n\n    fitter = Fitter(model=net, device=device, config=TrainGlobalConfig)\n    if path:\n        fitter.load(f'/content/effdet5-cutmix-augmix/best-checkpoint-012epoch.bin')\n    fitter.fit(train_loader, val_loader)\n#     return train_loader, val_loader","metadata":{"id":"feNxRgmW1QFx","execution":{"iopub.status.busy":"2024-02-13T02:29:02.118693Z","iopub.execute_input":"2024-02-13T02:29:02.119145Z","iopub.status.idle":"2024-02-13T02:29:02.132528Z","shell.execute_reply.started":"2024-02-13T02:29:02.119101Z","shell.execute_reply":"2024-02-13T02:29:02.131170Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"import gc\ntorch.cuda.empty_cache()\ngc.collect()","metadata":{"id":"5DMeeiKc1QFy","outputId":"4ee47f44-75db-42fc-cd8c-d25018f0c4dc","execution":{"iopub.status.busy":"2023-12-12T17:21:08.557493Z","iopub.execute_input":"2023-12-12T17:21:08.558202Z","iopub.status.idle":"2023-12-12T17:21:08.882156Z","shell.execute_reply.started":"2023-12-12T17:21:08.558164Z","shell.execute_reply":"2023-12-12T17:21:08.881047Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"run_training(path=False, first_training=True)","metadata":{"id":"AatkAx651QFz","outputId":"2c686fc2-a12d-4b57-815f-2e2be81417cf","execution":{"iopub.status.busy":"2023-12-12T17:21:14.258000Z","iopub.execute_input":"2023-12-12T17:21:14.258412Z","iopub.status.idle":"2023-12-12T17:28:32.000422Z","shell.execute_reply.started":"2023-12-12T17:21:14.258380Z","shell.execute_reply":"2023-12-12T17:28:31.999243Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"# from kaggle.api.kaggle_api_extended import KaggleApi\n\n# datasetDir = f'efficient-{str(datetime.now())}'\n\n# api = KaggleApi()\n# api.authenticate()\n\n# if not os.path.exists(datasetDir):\n#     os.makedirs(datasetDir)\n\n# api.dataset_initialize(datasetDir)\n\n# title=f'efficientdet-gwhd-title-{str(datetime.now())}'\n# slug=f'efficientdet-gwhd-slug-{str(datetime.now())}'\n# !sed -i \"s/INSERT_TITLE_HERE/$title/\" $datasetDir/dataset-metadata.json\n# !sed -i \"s/INSERT_SLUG_HERE/$slug/\" $datasetDir/dataset-metadata.json\n\n# !cp /content/effdet5-cutmix-augmix/* $datasetDir/\n# !cp /content/kaggle/working/data/* $datasetDir/\n\n# api.dataset_create_new(datasetDir)","metadata":{"id":"19f3lsWe1QF2","outputId":"04f2bb49-56f3-4574-ce39-1578c7992ebe","execution":{"iopub.status.busy":"2023-12-12T17:29:05.820657Z","iopub.execute_input":"2023-12-12T17:29:05.821454Z","iopub.status.idle":"2023-12-12T17:29:05.826147Z","shell.execute_reply.started":"2023-12-12T17:29:05.821422Z","shell.execute_reply":"2023-12-12T17:29:05.825132Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"## Acknowledgement\n### Thank you for reading my kernel!\n\nPart of our code is borrowed from the following repositories. Thanks to these notebooks, I was able to implement my code, you can refer to these kernels for better understanding:\n\n- [[Training] EfficientDet](https://www.kaggle.com/shonenkov/training-efficientdet)\n- [WBF approach for ensemble](https://www.kaggle.com/shonenkov/wbf-approach-for-ensemble)","metadata":{"id":"5YytCINr1QF5"}}]}